Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
AP3B1O00203 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
AP3B1O00203 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
AP3B1O00203 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.52■□□□□ 0.08
AP3B1O00203 AC055876.3-201ENST00000431496 288 ntBASIC15.52■□□□□ 0.08
AP3B1O00203 METTL21AP1-201ENST00000438852 635 ntBASIC15.52■□□□□ 0.08
AP3B1O00203 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
AP3B1O00203 GAPDHP40-201ENST00000505218 1006 ntBASIC15.52■□□□□ 0.08
AP3B1O00203 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
AP3B1O00203 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
AP3B1O00203 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.52■□□□□ 0.08
AP3B1O00203 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.52■□□□□ 0.08
AP3B1O00203 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
AP3B1O00203 RARRES2P5-201ENST00000564013 466 ntBASIC15.52■□□□□ 0.08
AP3B1O00203 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.52■□□□□ 0.08
AP3B1O00203 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.52■□□□□ 0.08
AP3B1O00203 SRD5A3P1-201ENST00000603021 949 ntBASIC15.52■□□□□ 0.08
AP3B1O00203 AC138649.4-201ENST00000612222 287 ntBASIC15.52■□□□□ 0.08
AP3B1O00203 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.52■□□□□ 0.08
AP3B1O00203 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
AP3B1O00203 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.07
AP3B1O00203 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
AP3B1O00203 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
AP3B1O00203 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.07
AP3B1O00203 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.52■□□□□ 0.07
AP3B1O00203 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
AP3B1O00203 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.52■□□□□ 0.07
AP3B1O00203 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
AP3B1O00203 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
AP3B1O00203 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.52■□□□□ 0.07
AP3B1O00203 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
AP3B1O00203 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
AP3B1O00203 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
AP3B1O00203 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
AP3B1O00203 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
AP3B1O00203 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
AP3B1O00203 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
AP3B1O00203 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
AP3B1O00203 AC022144.1-201ENST00000602255 1580 ntBASIC15.51■□□□□ 0.07
AP3B1O00203 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.51■□□□□ 0.07
AP3B1O00203 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.51■□□□□ 0.07
AP3B1O00203 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.51■□□□□ 0.07
AP3B1O00203 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 NUS1P3-201ENST00000423502 862 ntBASIC15.51■□□□□ 0.07
AP3B1O00203 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.51■□□□□ 0.07
AP3B1O00203 AL512638.1-201ENST00000457493 794 ntBASIC15.51■□□□□ 0.07
AP3B1O00203 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.51■□□□□ 0.07
AP3B1O00203 AL391069.4-201ENST00000609583 481 ntBASIC15.51■□□□□ 0.07
AP3B1O00203 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.51■□□□□ 0.07
AP3B1O00203 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 AC232323.1-201ENST00000540724 2099 ntBASIC15.51■□□□□ 0.07
AP3B1O00203 REXO1L5P-201ENST00000622260 2098 ntBASIC15.51■□□□□ 0.07
AP3B1O00203 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.51■□□□□ 0.07
AP3B1O00203 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
AP3B1O00203 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.5■□□□□ 0.07
AP3B1O00203 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.5■□□□□ 0.07
AP3B1O00203 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
AP3B1O00203 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
AP3B1O00203 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
AP3B1O00203 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
AP3B1O00203 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.5■□□□□ 0.07
AP3B1O00203 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.5■□□□□ 0.07
AP3B1O00203 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
AP3B1O00203 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.5■□□□□ 0.07
AP3B1O00203 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
AP3B1O00203 AL360270.3-201ENST00000609118 1348 ntBASIC15.5■□□□□ 0.07
AP3B1O00203 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.5■□□□□ 0.07
AP3B1O00203 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
AP3B1O00203 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
AP3B1O00203 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.5■□□□□ 0.07
AP3B1O00203 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
AP3B1O00203 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.5■□□□□ 0.07
AP3B1O00203 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
AP3B1O00203 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
AP3B1O00203 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms