Protein–RNA interactions for Protein: Q9Y5I1

PCDHA11, Protocadherin alpha-11, humanhuman

Predictions only

Length 949 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11Q9Y5I1 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA11Q9Y5I1 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 AP004609.3-201ENST00000610705 1884 ntBASIC25.26■■□□□ 1.63
PCDHA11Q9Y5I1 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA11Q9Y5I1 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA11Q9Y5I1 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA11Q9Y5I1 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA11Q9Y5I1 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA11Q9Y5I1 CA15P2-201ENST00000611168 834 ntBASIC25.25■■□□□ 1.63
PCDHA11Q9Y5I1 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.25■■□□□ 1.63
PCDHA11Q9Y5I1 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.25■■□□□ 1.63
PCDHA11Q9Y5I1 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHA11Q9Y5I1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHA11Q9Y5I1 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHA11Q9Y5I1 RASA4CP-201ENST00000424092 1398 ntBASIC25.24■■□□□ 1.63
PCDHA11Q9Y5I1 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.24■■□□□ 1.63
PCDHA11Q9Y5I1 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 MIR4767-201ENST00000582827 78 ntBASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 AC090877.2-201ENST00000558441 1738 ntBASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.23■■□□□ 1.63
PCDHA11Q9Y5I1 AC092171.4-201ENST00000609130 632 ntBASIC25.22■■□□□ 1.63
PCDHA11Q9Y5I1 SYT6-210ENST00000641643 1587 ntBASIC25.22■■□□□ 1.63
PCDHA11Q9Y5I1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.21■■□□□ 1.63
PCDHA11Q9Y5I1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHA11Q9Y5I1 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
PCDHA11Q9Y5I1 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.21■■□□□ 1.63
PCDHA11Q9Y5I1 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHA11Q9Y5I1 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.21■■□□□ 1.63
PCDHA11Q9Y5I1 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.63
PCDHA11Q9Y5I1 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
PCDHA11Q9Y5I1 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA11Q9Y5I1 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA11Q9Y5I1 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC25.2■■□□□ 1.62
PCDHA11Q9Y5I1 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHA11Q9Y5I1 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
PCDHA11Q9Y5I1 AC091060.1-201ENST00000623524 1766 ntBASIC25.19■■□□□ 1.62
PCDHA11Q9Y5I1 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.19■■□□□ 1.62
PCDHA11Q9Y5I1 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC25.19■■□□□ 1.62
PCDHA11Q9Y5I1 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
PCDHA11Q9Y5I1 AC027682.1-201ENST00000562846 899 ntBASIC25.18■■□□□ 1.62
PCDHA11Q9Y5I1 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC25.18■■□□□ 1.62
PCDHA11Q9Y5I1 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHA11Q9Y5I1 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
PCDHA11Q9Y5I1 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.18■■□□□ 1.62
PCDHA11Q9Y5I1 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.18■■□□□ 1.62
PCDHA11Q9Y5I1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHA11Q9Y5I1 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC25.17■■□□□ 1.62
PCDHA11Q9Y5I1 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC25.17■■□□□ 1.62
PCDHA11Q9Y5I1 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA11Q9Y5I1 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.17■■□□□ 1.62
PCDHA11Q9Y5I1 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA11Q9Y5I1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA11Q9Y5I1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHA11Q9Y5I1 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHA11Q9Y5I1 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHA11Q9Y5I1 IRS3P-201ENST00000223076 1006 ntBASIC25.16■■□□□ 1.62
PCDHA11Q9Y5I1 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHA11Q9Y5I1 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC25.16■■□□□ 1.62
PCDHA11Q9Y5I1 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC25.16■■□□□ 1.62
PCDHA11Q9Y5I1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC25.16■■□□□ 1.62
PCDHA11Q9Y5I1 RARRES2P11-201ENST00000635158 484 ntBASIC25.15■■□□□ 1.62
PCDHA11Q9Y5I1 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHA11Q9Y5I1 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.14■■□□□ 1.62
PCDHA11Q9Y5I1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
PCDHA11Q9Y5I1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
PCDHA11Q9Y5I1 AC090192.1-201ENST00000517740 490 ntBASIC25.14■■□□□ 1.62
PCDHA11Q9Y5I1 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PCDHA11Q9Y5I1 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
PCDHA11Q9Y5I1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
PCDHA11Q9Y5I1 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
PCDHA11Q9Y5I1 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
PCDHA11Q9Y5I1 AC005703.6-201ENST00000623265 1329 ntBASIC25.13■■□□□ 1.61
PCDHA11Q9Y5I1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC25.13■■□□□ 1.61
PCDHA11Q9Y5I1 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHA11Q9Y5I1 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
PCDHA11Q9Y5I1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHA11Q9Y5I1 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
PCDHA11Q9Y5I1 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms