Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA3Q9Y5H8 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA3Q9Y5H8 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA3Q9Y5H8 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC24.18■■□□□ 1.46
PCDHA3Q9Y5H8 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA3Q9Y5H8 DUX4L9-201ENST00000449051 1259 ntBASIC24.18■■□□□ 1.46
PCDHA3Q9Y5H8 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.18■■□□□ 1.46
PCDHA3Q9Y5H8 MIR6765-201ENST00000614092 87 ntBASIC24.18■■□□□ 1.46
PCDHA3Q9Y5H8 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA3Q9Y5H8 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA3Q9Y5H8 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA3Q9Y5H8 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 SSSCA1-AS1-201ENST00000567594 614 ntBASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
PCDHA3Q9Y5H8 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
PCDHA3Q9Y5H8 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHA3Q9Y5H8 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHA3Q9Y5H8 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHA3Q9Y5H8 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHA3Q9Y5H8 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHA3Q9Y5H8 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHA3Q9Y5H8 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHA3Q9Y5H8 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC24.16■■□□□ 1.46
PCDHA3Q9Y5H8 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHA3Q9Y5H8 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHA3Q9Y5H8 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHA3Q9Y5H8 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHA3Q9Y5H8 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.15■■□□□ 1.46
PCDHA3Q9Y5H8 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.15■■□□□ 1.46
PCDHA3Q9Y5H8 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC24.15■■□□□ 1.46
PCDHA3Q9Y5H8 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHA3Q9Y5H8 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC24.14■■□□□ 1.46
PCDHA3Q9Y5H8 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PCDHA3Q9Y5H8 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
PCDHA3Q9Y5H8 RARRES2P2-201ENST00000394842 485 ntBASIC24.14■■□□□ 1.45
PCDHA3Q9Y5H8 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
PCDHA3Q9Y5H8 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHA3Q9Y5H8 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.14■■□□□ 1.45
PCDHA3Q9Y5H8 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC24.14■■□□□ 1.45
PCDHA3Q9Y5H8 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHA3Q9Y5H8 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHA3Q9Y5H8 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHA3Q9Y5H8 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC24.13■■□□□ 1.45
PCDHA3Q9Y5H8 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
PCDHA3Q9Y5H8 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHA3Q9Y5H8 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
PCDHA3Q9Y5H8 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHA3Q9Y5H8 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC24.13■■□□□ 1.45
PCDHA3Q9Y5H8 NFE2L3P1-201ENST00000588207 1959 ntBASIC24.12■■□□□ 1.45
PCDHA3Q9Y5H8 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHA3Q9Y5H8 LONRF2P2-201ENST00000439212 571 ntBASIC24.12■■□□□ 1.45
PCDHA3Q9Y5H8 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC24.12■■□□□ 1.45
PCDHA3Q9Y5H8 U85056.1-201ENST00000616429 682 ntBASIC24.12■■□□□ 1.45
PCDHA3Q9Y5H8 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHA3Q9Y5H8 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHA3Q9Y5H8 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHA3Q9Y5H8 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHA3Q9Y5H8 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHA3Q9Y5H8 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC24.11■■□□□ 1.45
PCDHA3Q9Y5H8 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC24.11■■□□□ 1.45
PCDHA3Q9Y5H8 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHA3Q9Y5H8 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHA3Q9Y5H8 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHA3Q9Y5H8 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHA3Q9Y5H8 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA3Q9Y5H8 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA3Q9Y5H8 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA3Q9Y5H8 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA3Q9Y5H8 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA3Q9Y5H8 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA3Q9Y5H8 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHA3Q9Y5H8 AL161729.1-201ENST00000604104 1402 ntBASIC24.1■■□□□ 1.45
PCDHA3Q9Y5H8 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHA3Q9Y5H8 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHA3Q9Y5H8 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
PCDHA3Q9Y5H8 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC24.09■■□□□ 1.45
PCDHA3Q9Y5H8 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC24.09■■□□□ 1.45
PCDHA3Q9Y5H8 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC24.09■■□□□ 1.45
PCDHA3Q9Y5H8 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHA3Q9Y5H8 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC24.09■■□□□ 1.45
PCDHA3Q9Y5H8 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC24.09■■□□□ 1.45
PCDHA3Q9Y5H8 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 CD37-213ENST00000598095 1598 ntTSL 2 BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 ME2-208ENST00000638937 2471 ntTSL 5 BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms