Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
ZC3H4Q9UPT8 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
ZC3H4Q9UPT8 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
ZC3H4Q9UPT8 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC28.31■■■□□ 2.12
ZC3H4Q9UPT8 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC28.31■■■□□ 2.12
ZC3H4Q9UPT8 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC28.31■■■□□ 2.12
ZC3H4Q9UPT8 AC099791.2-201ENST00000605725 427 ntBASIC28.31■■■□□ 2.12
ZC3H4Q9UPT8 AC233992.3-201ENST00000607491 485 ntBASIC28.31■■■□□ 2.12
ZC3H4Q9UPT8 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC28.31■■■□□ 2.12
ZC3H4Q9UPT8 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
ZC3H4Q9UPT8 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
ZC3H4Q9UPT8 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
ZC3H4Q9UPT8 DUX4L2-201ENST00000561772 1275 ntBASIC28.3■■■□□ 2.12
ZC3H4Q9UPT8 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC28.3■■■□□ 2.12
ZC3H4Q9UPT8 DUX4L6-201ENST00000626483 1275 ntBASIC28.3■■■□□ 2.12
ZC3H4Q9UPT8 DUX4L1-201ENST00000627662 1275 ntBASIC28.3■■■□□ 2.12
ZC3H4Q9UPT8 DUX4L8-201ENST00000629013 1275 ntBASIC28.3■■■□□ 2.12
ZC3H4Q9UPT8 DUX4L3-201ENST00000630187 1275 ntBASIC28.3■■■□□ 2.12
ZC3H4Q9UPT8 DUX4L7-201ENST00000630678 1275 ntBASIC28.3■■■□□ 2.12
ZC3H4Q9UPT8 DUX4L5-201ENST00000630834 1275 ntBASIC28.3■■■□□ 2.12
ZC3H4Q9UPT8 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
ZC3H4Q9UPT8 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC28.29■■■□□ 2.12
ZC3H4Q9UPT8 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC28.29■■■□□ 2.12
ZC3H4Q9UPT8 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC28.29■■■□□ 2.12
ZC3H4Q9UPT8 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
ZC3H4Q9UPT8 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC28.29■■■□□ 2.12
ZC3H4Q9UPT8 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
ZC3H4Q9UPT8 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.28■■■□□ 2.12
ZC3H4Q9UPT8 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
ZC3H4Q9UPT8 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
ZC3H4Q9UPT8 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
ZC3H4Q9UPT8 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
ZC3H4Q9UPT8 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
ZC3H4Q9UPT8 AC004911.1-201ENST00000416316 871 ntBASIC28.28■■■□□ 2.12
ZC3H4Q9UPT8 BX842568.3-201ENST00000418104 571 ntBASIC28.28■■■□□ 2.12
ZC3H4Q9UPT8 AL031602.1-201ENST00000633169 911 ntBASIC28.28■■■□□ 2.12
ZC3H4Q9UPT8 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC28.28■■■□□ 2.12
ZC3H4Q9UPT8 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
ZC3H4Q9UPT8 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
ZC3H4Q9UPT8 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC28.27■■■□□ 2.12
ZC3H4Q9UPT8 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
ZC3H4Q9UPT8 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
ZC3H4Q9UPT8 DRD5P2-201ENST00000421395 2012 ntBASIC28.27■■■□□ 2.12
ZC3H4Q9UPT8 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC28.27■■■□□ 2.12
ZC3H4Q9UPT8 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
ZC3H4Q9UPT8 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC28.26■■■□□ 2.11
ZC3H4Q9UPT8 VPS53-216ENST00000574029 585 ntTSL 4 BASIC28.26■■■□□ 2.11
ZC3H4Q9UPT8 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC28.26■■■□□ 2.11
ZC3H4Q9UPT8 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
ZC3H4Q9UPT8 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
ZC3H4Q9UPT8 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.11
ZC3H4Q9UPT8 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
ZC3H4Q9UPT8 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
ZC3H4Q9UPT8 HES6-206ENST00000409574 738 ntTSL 2 BASIC28.25■■■□□ 2.11
ZC3H4Q9UPT8 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC28.25■■■□□ 2.11
ZC3H4Q9UPT8 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC28.25■■■□□ 2.11
ZC3H4Q9UPT8 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC28.25■■■□□ 2.11
ZC3H4Q9UPT8 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
ZC3H4Q9UPT8 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC28.25■■■□□ 2.11
ZC3H4Q9UPT8 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
ZC3H4Q9UPT8 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
ZC3H4Q9UPT8 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC28.24■■■□□ 2.11
ZC3H4Q9UPT8 RAB43-208ENST00000615093 783 ntTSL 5 BASIC28.24■■■□□ 2.11
ZC3H4Q9UPT8 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC28.24■■■□□ 2.11
ZC3H4Q9UPT8 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC28.24■■■□□ 2.11
ZC3H4Q9UPT8 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
ZC3H4Q9UPT8 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
ZC3H4Q9UPT8 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC28.23■■■□□ 2.11
ZC3H4Q9UPT8 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC28.23■■■□□ 2.11
ZC3H4Q9UPT8 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
ZC3H4Q9UPT8 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
ZC3H4Q9UPT8 LINC01003-201ENST00000564834 1764 ntBASIC28.23■■■□□ 2.11
ZC3H4Q9UPT8 GRAMD4P2-201ENST00000423297 1097 ntBASIC28.22■■■□□ 2.11
ZC3H4Q9UPT8 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
ZC3H4Q9UPT8 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
ZC3H4Q9UPT8 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC28.22■■■□□ 2.11
ZC3H4Q9UPT8 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC28.22■■■□□ 2.11
ZC3H4Q9UPT8 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ZC3H4Q9UPT8 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ZC3H4Q9UPT8 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ZC3H4Q9UPT8 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
ZC3H4Q9UPT8 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
ZC3H4Q9UPT8 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC28.21■■■□□ 2.11
ZC3H4Q9UPT8 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC28.21■■■□□ 2.11
ZC3H4Q9UPT8 AC123595.1-201ENST00000440769 1046 ntBASIC28.21■■■□□ 2.11
ZC3H4Q9UPT8 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC28.21■■■□□ 2.11
ZC3H4Q9UPT8 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
ZC3H4Q9UPT8 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
ZC3H4Q9UPT8 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC28.21■■■□□ 2.11
ZC3H4Q9UPT8 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
ZC3H4Q9UPT8 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
ZC3H4Q9UPT8 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
ZC3H4Q9UPT8 AC027612.3-201ENST00000413684 1047 ntBASIC28.2■■■□□ 2.11
ZC3H4Q9UPT8 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC28.2■■■□□ 2.11
ZC3H4Q9UPT8 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC28.2■■■□□ 2.11
ZC3H4Q9UPT8 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC28.2■■■□□ 2.11
ZC3H4Q9UPT8 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
ZC3H4Q9UPT8 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
ZC3H4Q9UPT8 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
ZC3H4Q9UPT8 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms