Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SCN2AQ99250 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.83■■□□□ 1.09
SCN2AQ99250 AC131274.2-201ENST00000580697 1507 ntBASIC21.83■■□□□ 1.09
SCN2AQ99250 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SCN2AQ99250 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SCN2AQ99250 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SCN2AQ99250 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.83■■□□□ 1.09
SCN2AQ99250 KRT16P3-201ENST00000439127 1283 ntBASIC21.83■■□□□ 1.09
SCN2AQ99250 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
SCN2AQ99250 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.83■■□□□ 1.08
SCN2AQ99250 AC021242.3-201ENST00000607598 1377 ntBASIC21.82■■□□□ 1.08
SCN2AQ99250 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCN2AQ99250 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.82■■□□□ 1.08
SCN2AQ99250 UNC93B8-201ENST00000511903 705 ntBASIC21.82■■□□□ 1.08
SCN2AQ99250 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.82■■□□□ 1.08
SCN2AQ99250 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SCN2AQ99250 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCN2AQ99250 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCN2AQ99250 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
SCN2AQ99250 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCN2AQ99250 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCN2AQ99250 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
SCN2AQ99250 LINC01124-201ENST00000409786 2117 ntBASIC21.82■■□□□ 1.08
SCN2AQ99250 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.82■■□□□ 1.08
SCN2AQ99250 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
SCN2AQ99250 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.81■■□□□ 1.08
SCN2AQ99250 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCN2AQ99250 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCN2AQ99250 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.81■■□□□ 1.08
SCN2AQ99250 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.81■■□□□ 1.08
SCN2AQ99250 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SCN2AQ99250 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.8■■□□□ 1.08
SCN2AQ99250 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SCN2AQ99250 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SCN2AQ99250 AC092028.1-203ENST00000608262 953 ntBASIC21.8■■□□□ 1.08
SCN2AQ99250 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.8■■□□□ 1.08
SCN2AQ99250 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
SCN2AQ99250 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SCN2AQ99250 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SCN2AQ99250 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SCN2AQ99250 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SCN2AQ99250 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.79■■□□□ 1.08
SCN2AQ99250 AC142381.3-201ENST00000568208 1670 ntBASIC21.79■■□□□ 1.08
SCN2AQ99250 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.79■■□□□ 1.08
SCN2AQ99250 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SCN2AQ99250 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SCN2AQ99250 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SCN2AQ99250 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.78■■□□□ 1.08
SCN2AQ99250 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.78■■□□□ 1.08
SCN2AQ99250 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN2AQ99250 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.78■■□□□ 1.08
SCN2AQ99250 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.78■■□□□ 1.08
SCN2AQ99250 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCN2AQ99250 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCN2AQ99250 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.78■■□□□ 1.08
SCN2AQ99250 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCN2AQ99250 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.78■■□□□ 1.08
SCN2AQ99250 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.78■■□□□ 1.08
SCN2AQ99250 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.78■■□□□ 1.08
SCN2AQ99250 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCN2AQ99250 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
SCN2AQ99250 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.78■■□□□ 1.08
SCN2AQ99250 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.78■■□□□ 1.08
SCN2AQ99250 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SCN2AQ99250 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SCN2AQ99250 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SCN2AQ99250 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.77■■□□□ 1.08
SCN2AQ99250 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
SCN2AQ99250 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SCN2AQ99250 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SCN2AQ99250 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SCN2AQ99250 ABCB10P4-201ENST00000566803 2184 ntBASIC21.77■■□□□ 1.07
SCN2AQ99250 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.76■■□□□ 1.07
SCN2AQ99250 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.76■■□□□ 1.07
SCN2AQ99250 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
SCN2AQ99250 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SCN2AQ99250 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SCN2AQ99250 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
SCN2AQ99250 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.76■■□□□ 1.07
SCN2AQ99250 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SCN2AQ99250 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SCN2AQ99250 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN2AQ99250 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN2AQ99250 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN2AQ99250 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN2AQ99250 LINC00543-201ENST00000567234 1845 ntBASIC21.75■■□□□ 1.07
SCN2AQ99250 HLA-L-211ENST00000482052 1765 ntBASIC21.75■■□□□ 1.07
SCN2AQ99250 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN2AQ99250 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
SCN2AQ99250 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.75■■□□□ 1.07
SCN2AQ99250 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN2AQ99250 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN2AQ99250 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SCN2AQ99250 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SCN2AQ99250 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.74■■□□□ 1.07
SCN2AQ99250 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
SCN2AQ99250 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.74■■□□□ 1.07
SCN2AQ99250 AL356441.2-201ENST00000443009 864 ntBASIC21.74■■□□□ 1.07
SCN2AQ99250 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SCN2AQ99250 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms