Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22.64■■□□□ 1.21
LMX1AQ8TE12 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
LMX1AQ8TE12 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
LMX1AQ8TE12 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.63■■□□□ 1.21
LMX1AQ8TE12 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC22.63■■□□□ 1.21
LMX1AQ8TE12 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
LMX1AQ8TE12 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
LMX1AQ8TE12 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
LMX1AQ8TE12 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
LMX1AQ8TE12 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.62■■□□□ 1.21
LMX1AQ8TE12 AC005703.6-201ENST00000623265 1329 ntBASIC22.62■■□□□ 1.21
LMX1AQ8TE12 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
LMX1AQ8TE12 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.62■■□□□ 1.21
LMX1AQ8TE12 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
LMX1AQ8TE12 SRD5A1P1-201ENST00000442297 786 ntBASIC22.62■■□□□ 1.21
LMX1AQ8TE12 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.62■■□□□ 1.21
LMX1AQ8TE12 AC091060.1-201ENST00000623524 1766 ntBASIC22.62■■□□□ 1.21
LMX1AQ8TE12 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
LMX1AQ8TE12 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.62■■□□□ 1.21
LMX1AQ8TE12 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
LMX1AQ8TE12 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
LMX1AQ8TE12 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.61■■□□□ 1.21
LMX1AQ8TE12 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
LMX1AQ8TE12 PBX2P1-201ENST00000493219 1291 ntBASIC22.61■■□□□ 1.21
LMX1AQ8TE12 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.61■■□□□ 1.21
LMX1AQ8TE12 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.61■■□□□ 1.21
LMX1AQ8TE12 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
LMX1AQ8TE12 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
LMX1AQ8TE12 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
LMX1AQ8TE12 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
LMX1AQ8TE12 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.6■■□□□ 1.21
LMX1AQ8TE12 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
LMX1AQ8TE12 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.6■■□□□ 1.21
LMX1AQ8TE12 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 UNC93B3-201ENST00000308076 687 ntBASIC22.59■■□□□ 1.21
LMX1AQ8TE12 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
LMX1AQ8TE12 AC145676.1-201ENST00000514988 2004 ntBASIC22.58■■□□□ 1.21
LMX1AQ8TE12 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.58■■□□□ 1.21
LMX1AQ8TE12 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.58■■□□□ 1.21
LMX1AQ8TE12 AC131274.2-201ENST00000580697 1507 ntBASIC22.58■■□□□ 1.21
LMX1AQ8TE12 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
LMX1AQ8TE12 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC22.58■■□□□ 1.21
LMX1AQ8TE12 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.58■■□□□ 1.21
LMX1AQ8TE12 AC133561.4-201ENST00000566112 224 ntBASIC22.58■■□□□ 1.21
LMX1AQ8TE12 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
LMX1AQ8TE12 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
LMX1AQ8TE12 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
LMX1AQ8TE12 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.57■■□□□ 1.2
LMX1AQ8TE12 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
LMX1AQ8TE12 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LMX1AQ8TE12 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.57■■□□□ 1.2
LMX1AQ8TE12 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LMX1AQ8TE12 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LMX1AQ8TE12 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
LMX1AQ8TE12 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
LMX1AQ8TE12 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.56■■□□□ 1.2
LMX1AQ8TE12 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
LMX1AQ8TE12 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC22.56■■□□□ 1.2
LMX1AQ8TE12 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
LMX1AQ8TE12 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.56■■□□□ 1.2
LMX1AQ8TE12 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC22.56■■□□□ 1.2
LMX1AQ8TE12 MIR6089-201ENST00000616698 64 ntBASIC22.56■■□□□ 1.2
LMX1AQ8TE12 AC106739.1-201ENST00000617035 715 ntBASIC22.56■■□□□ 1.2
LMX1AQ8TE12 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
LMX1AQ8TE12 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
LMX1AQ8TE12 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
LMX1AQ8TE12 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LMX1AQ8TE12 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
LMX1AQ8TE12 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LMX1AQ8TE12 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.55■■□□□ 1.2
LMX1AQ8TE12 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LMX1AQ8TE12 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LMX1AQ8TE12 AL136162.1-201ENST00000607711 1078 ntBASIC22.55■■□□□ 1.2
LMX1AQ8TE12 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LMX1AQ8TE12 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
LMX1AQ8TE12 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
LMX1AQ8TE12 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
LMX1AQ8TE12 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LMX1AQ8TE12 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LMX1AQ8TE12 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.54■■□□□ 1.2
LMX1AQ8TE12 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
LMX1AQ8TE12 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LMX1AQ8TE12 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC22.53■■□□□ 1.2
LMX1AQ8TE12 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC22.53■■□□□ 1.2
LMX1AQ8TE12 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.53■■□□□ 1.2
LMX1AQ8TE12 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LMX1AQ8TE12 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.53■■□□□ 1.2
LMX1AQ8TE12 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LMX1AQ8TE12 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LMX1AQ8TE12 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms