Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DEPDC4Q8N2C3 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.32■■□□□ 1
DEPDC4Q8N2C3 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
DEPDC4Q8N2C3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.32■■□□□ 1
DEPDC4Q8N2C3 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.32■■□□□ 1
DEPDC4Q8N2C3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DEPDC4Q8N2C3 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
DEPDC4Q8N2C3 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
DEPDC4Q8N2C3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
DEPDC4Q8N2C3 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DEPDC4Q8N2C3 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.31■■□□□ 1
DEPDC4Q8N2C3 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.31■■□□□ 1
DEPDC4Q8N2C3 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DEPDC4Q8N2C3 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DEPDC4Q8N2C3 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.31■■□□□ 1
DEPDC4Q8N2C3 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
DEPDC4Q8N2C3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
DEPDC4Q8N2C3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.3■■□□□ 1
DEPDC4Q8N2C3 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.3■■□□□ 1
DEPDC4Q8N2C3 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.3■■□□□ 1
DEPDC4Q8N2C3 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DEPDC4Q8N2C3 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
DEPDC4Q8N2C3 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.3■■□□□ 1
DEPDC4Q8N2C3 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.3■■□□□ 1
DEPDC4Q8N2C3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
DEPDC4Q8N2C3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
DEPDC4Q8N2C3 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 KRT18P60-201ENST00000312876 1297 ntBASIC21.29■■□□□ 1
DEPDC4Q8N2C3 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
DEPDC4Q8N2C3 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DEPDC4Q8N2C3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.28■■□□□ 1
DEPDC4Q8N2C3 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
DEPDC4Q8N2C3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
DEPDC4Q8N2C3 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.28■■□□□ 1
DEPDC4Q8N2C3 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
DEPDC4Q8N2C3 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.28■■□□□ 1
DEPDC4Q8N2C3 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DEPDC4Q8N2C3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.27■■□□□ 1
DEPDC4Q8N2C3 TSPY13P-201ENST00000338964 914 ntBASIC21.27■■□□□ 1
DEPDC4Q8N2C3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
DEPDC4Q8N2C3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DEPDC4Q8N2C3 AL033527.3-201ENST00000566366 1196 ntBASIC21.27■■□□□ 1
DEPDC4Q8N2C3 AC093536.1-201ENST00000569153 554 ntBASIC21.27■■□□□ 1
DEPDC4Q8N2C3 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DEPDC4Q8N2C3 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.27■■□□□ 1
DEPDC4Q8N2C3 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DEPDC4Q8N2C3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
DEPDC4Q8N2C3 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DEPDC4Q8N2C3 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
DEPDC4Q8N2C3 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
DEPDC4Q8N2C3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DEPDC4Q8N2C3 AC009831.1-201ENST00000580420 1582 ntBASIC21.26■□□□□ 0.99
DEPDC4Q8N2C3 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DEPDC4Q8N2C3 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
DEPDC4Q8N2C3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
DEPDC4Q8N2C3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DEPDC4Q8N2C3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
DEPDC4Q8N2C3 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
DEPDC4Q8N2C3 AC026202.3-201ENST00000600805 1127 ntBASIC21.25■□□□□ 0.99
DEPDC4Q8N2C3 CLDN5-201ENST00000403084 2357 ntBASIC21.25■□□□□ 0.99
DEPDC4Q8N2C3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
DEPDC4Q8N2C3 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DEPDC4Q8N2C3 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DEPDC4Q8N2C3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DEPDC4Q8N2C3 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DEPDC4Q8N2C3 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DEPDC4Q8N2C3 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DEPDC4Q8N2C3 AL592293.1-201ENST00000502889 1188 ntBASIC21.24■□□□□ 0.99
DEPDC4Q8N2C3 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DEPDC4Q8N2C3 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DEPDC4Q8N2C3 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
DEPDC4Q8N2C3 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 ATP5G2P3-201ENST00000429083 425 ntBASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
DEPDC4Q8N2C3 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms