Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RETREG3Q86VR2 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.04■■□□□ 1.12
RETREG3Q86VR2 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RETREG3Q86VR2 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC22.03■■□□□ 1.12
RETREG3Q86VR2 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
RETREG3Q86VR2 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.03■■□□□ 1.12
RETREG3Q86VR2 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.03■■□□□ 1.12
RETREG3Q86VR2 RAP2CP1-202ENST00000605179 643 ntBASIC22.03■■□□□ 1.12
RETREG3Q86VR2 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RETREG3Q86VR2 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RETREG3Q86VR2 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.03■■□□□ 1.12
RETREG3Q86VR2 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RETREG3Q86VR2 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RETREG3Q86VR2 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
RETREG3Q86VR2 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
RETREG3Q86VR2 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RETREG3Q86VR2 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RETREG3Q86VR2 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.02■■□□□ 1.12
RETREG3Q86VR2 AC007029.1-201ENST00000604183 313 ntBASIC22.02■■□□□ 1.12
RETREG3Q86VR2 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RETREG3Q86VR2 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.02■■□□□ 1.12
RETREG3Q86VR2 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RETREG3Q86VR2 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RETREG3Q86VR2 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
RETREG3Q86VR2 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
RETREG3Q86VR2 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC22.02■■□□□ 1.11
RETREG3Q86VR2 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
RETREG3Q86VR2 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC22.01■■□□□ 1.11
RETREG3Q86VR2 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.01■■□□□ 1.11
RETREG3Q86VR2 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC22.01■■□□□ 1.11
RETREG3Q86VR2 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.01■■□□□ 1.11
RETREG3Q86VR2 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RETREG3Q86VR2 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC22.01■■□□□ 1.11
RETREG3Q86VR2 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RETREG3Q86VR2 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.01■■□□□ 1.11
RETREG3Q86VR2 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
RETREG3Q86VR2 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC22.01■■□□□ 1.11
RETREG3Q86VR2 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22■■□□□ 1.11
RETREG3Q86VR2 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
RETREG3Q86VR2 SRP68-213ENST00000629930 165 ntTSL 5 BASIC22■■□□□ 1.11
RETREG3Q86VR2 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RETREG3Q86VR2 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
RETREG3Q86VR2 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
RETREG3Q86VR2 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RETREG3Q86VR2 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
RETREG3Q86VR2 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.99■■□□□ 1.11
RETREG3Q86VR2 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RETREG3Q86VR2 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RETREG3Q86VR2 AC022413.1-201ENST00000624602 984 ntBASIC21.99■■□□□ 1.11
RETREG3Q86VR2 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RETREG3Q86VR2 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RETREG3Q86VR2 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RETREG3Q86VR2 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.98■■□□□ 1.11
RETREG3Q86VR2 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RETREG3Q86VR2 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
RETREG3Q86VR2 AL117328.2-201ENST00000624617 1940 ntBASIC21.98■■□□□ 1.11
RETREG3Q86VR2 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
RETREG3Q86VR2 AC026202.3-201ENST00000600805 1127 ntBASIC21.98■■□□□ 1.11
RETREG3Q86VR2 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
RETREG3Q86VR2 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RETREG3Q86VR2 CLDN5-201ENST00000403084 2357 ntBASIC21.98■■□□□ 1.11
RETREG3Q86VR2 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.98■■□□□ 1.11
RETREG3Q86VR2 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RETREG3Q86VR2 ANOS2P-203ENST00000472227 1816 ntBASIC21.97■■□□□ 1.11
RETREG3Q86VR2 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
RETREG3Q86VR2 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.97■■□□□ 1.11
RETREG3Q86VR2 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.97■■□□□ 1.11
RETREG3Q86VR2 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RETREG3Q86VR2 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
RETREG3Q86VR2 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
RETREG3Q86VR2 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.97■■□□□ 1.11
RETREG3Q86VR2 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RETREG3Q86VR2 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
RETREG3Q86VR2 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
RETREG3Q86VR2 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
RETREG3Q86VR2 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
RETREG3Q86VR2 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.96■■□□□ 1.11
RETREG3Q86VR2 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
RETREG3Q86VR2 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RETREG3Q86VR2 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RETREG3Q86VR2 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.96■■□□□ 1.11
RETREG3Q86VR2 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RETREG3Q86VR2 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.11
RETREG3Q86VR2 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RETREG3Q86VR2 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
RETREG3Q86VR2 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.95■■□□□ 1.1
RETREG3Q86VR2 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
RETREG3Q86VR2 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.95■■□□□ 1.1
RETREG3Q86VR2 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.95■■□□□ 1.1
RETREG3Q86VR2 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RETREG3Q86VR2 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RETREG3Q86VR2 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RETREG3Q86VR2 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RETREG3Q86VR2 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.94■■□□□ 1.1
RETREG3Q86VR2 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RETREG3Q86VR2 KRT18P10-201ENST00000388836 1287 ntBASIC21.94■■□□□ 1.1
RETREG3Q86VR2 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.94■■□□□ 1.1
RETREG3Q86VR2 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.94■■□□□ 1.1
RETREG3Q86VR2 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RETREG3Q86VR2 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms