Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
NPHP3Q7Z494 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
NPHP3Q7Z494 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
NPHP3Q7Z494 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
NPHP3Q7Z494 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
NPHP3Q7Z494 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC31.86■■■□□ 2.69
NPHP3Q7Z494 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
NPHP3Q7Z494 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
NPHP3Q7Z494 SHF-208ENST00000560734 1731 ntTSL 3 BASIC31.86■■■□□ 2.69
NPHP3Q7Z494 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
NPHP3Q7Z494 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC31.85■■■□□ 2.69
NPHP3Q7Z494 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
NPHP3Q7Z494 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
NPHP3Q7Z494 REST-206ENST00000612429 1376 ntTSL 5 BASIC31.85■■■□□ 2.69
NPHP3Q7Z494 REST-207ENST00000616975 1370 ntTSL 5 BASIC31.85■■■□□ 2.69
NPHP3Q7Z494 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
NPHP3Q7Z494 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
NPHP3Q7Z494 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
NPHP3Q7Z494 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
NPHP3Q7Z494 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC31.84■■■□□ 2.69
NPHP3Q7Z494 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
NPHP3Q7Z494 IKBKGP1-201ENST00000612193 1073 ntBASIC31.84■■■□□ 2.69
NPHP3Q7Z494 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
NPHP3Q7Z494 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
NPHP3Q7Z494 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
NPHP3Q7Z494 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
NPHP3Q7Z494 ASB1-202ENST00000409297 878 ntTSL 5 BASIC31.83■■■□□ 2.69
NPHP3Q7Z494 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
NPHP3Q7Z494 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
NPHP3Q7Z494 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC31.82■■■□□ 2.68
NPHP3Q7Z494 AC034268.1-201ENST00000441047 882 ntBASIC31.82■■■□□ 2.68
NPHP3Q7Z494 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC31.82■■■□□ 2.68
NPHP3Q7Z494 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC31.82■■■□□ 2.68
NPHP3Q7Z494 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC31.82■■■□□ 2.68
NPHP3Q7Z494 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
NPHP3Q7Z494 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
NPHP3Q7Z494 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.81■■■□□ 2.68
NPHP3Q7Z494 AK1-201ENST00000223836 736 ntTSL 3 BASIC31.81■■■□□ 2.68
NPHP3Q7Z494 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP3Q7Z494 AC136469.2-201ENST00000623944 1028 ntBASIC31.81■■■□□ 2.68
NPHP3Q7Z494 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP3Q7Z494 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP3Q7Z494 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP3Q7Z494 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP3Q7Z494 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP3Q7Z494 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC31.8■■■□□ 2.68
NPHP3Q7Z494 AC022517.1-201ENST00000592429 346 ntBASIC31.8■■■□□ 2.68
NPHP3Q7Z494 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC31.8■■■□□ 2.68
NPHP3Q7Z494 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC31.8■■■□□ 2.68
NPHP3Q7Z494 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP3Q7Z494 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC31.79■■■□□ 2.68
NPHP3Q7Z494 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC31.79■■■□□ 2.68
NPHP3Q7Z494 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC31.79■■■□□ 2.68
NPHP3Q7Z494 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
NPHP3Q7Z494 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
NPHP3Q7Z494 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
NPHP3Q7Z494 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC31.78■■■□□ 2.68
NPHP3Q7Z494 MPST-208ENST00000628507 698 ntTSL 5 BASIC31.78■■■□□ 2.68
NPHP3Q7Z494 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
NPHP3Q7Z494 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC31.77■■■□□ 2.68
NPHP3Q7Z494 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
NPHP3Q7Z494 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
NPHP3Q7Z494 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
NPHP3Q7Z494 AC097639.1-201ENST00000565519 1891 ntBASIC31.77■■■□□ 2.68
NPHP3Q7Z494 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
NPHP3Q7Z494 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
NPHP3Q7Z494 HES6-206ENST00000409574 738 ntTSL 2 BASIC31.76■■■□□ 2.68
NPHP3Q7Z494 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC31.76■■■□□ 2.68
NPHP3Q7Z494 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
NPHP3Q7Z494 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
NPHP3Q7Z494 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
NPHP3Q7Z494 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC31.75■■■□□ 2.67
NPHP3Q7Z494 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
NPHP3Q7Z494 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC31.75■■■□□ 2.67
NPHP3Q7Z494 AL137784.2-201ENST00000607332 1000 ntBASIC31.75■■■□□ 2.67
NPHP3Q7Z494 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC31.75■■■□□ 2.67
NPHP3Q7Z494 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
NPHP3Q7Z494 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
NPHP3Q7Z494 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC31.75■■■□□ 2.67
NPHP3Q7Z494 AC233992.3-201ENST00000607491 485 ntBASIC31.75■■■□□ 2.67
NPHP3Q7Z494 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC31.74■■■□□ 2.67
NPHP3Q7Z494 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
NPHP3Q7Z494 HACD1-201ENST00000326961 773 ntTSL 2 BASIC31.74■■■□□ 2.67
NPHP3Q7Z494 KRT18P5-201ENST00000436075 1291 ntBASIC31.74■■■□□ 2.67
NPHP3Q7Z494 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
NPHP3Q7Z494 AC009102.2-201ENST00000606772 1639 ntBASIC31.73■■■□□ 2.67
NPHP3Q7Z494 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
NPHP3Q7Z494 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
NPHP3Q7Z494 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC31.73■■■□□ 2.67
NPHP3Q7Z494 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC31.73■■■□□ 2.67
NPHP3Q7Z494 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
NPHP3Q7Z494 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC31.73■■■□□ 2.67
NPHP3Q7Z494 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC31.73■■■□□ 2.67
NPHP3Q7Z494 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
NPHP3Q7Z494 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC31.73■■■□□ 2.67
NPHP3Q7Z494 AC092437.1-201ENST00000624794 1048 ntBASIC31.73■■■□□ 2.67
NPHP3Q7Z494 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP3Q7Z494 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP3Q7Z494 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
NPHP3Q7Z494 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC31.72■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms