Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS13CQ709C8 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS13CQ709C8 AC027682.1-201ENST00000562846 899 ntBASIC19.5■□□□□ 0.71
VPS13CQ709C8 AL031602.1-201ENST00000633169 911 ntBASIC19.5■□□□□ 0.71
VPS13CQ709C8 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS13CQ709C8 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS13CQ709C8 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS13CQ709C8 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13CQ709C8 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13CQ709C8 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS13CQ709C8 AC090877.2-201ENST00000558441 1738 ntBASIC19.49■□□□□ 0.71
VPS13CQ709C8 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS13CQ709C8 AC142472.1-201ENST00000612013 1741 ntBASIC19.48■□□□□ 0.71
VPS13CQ709C8 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13CQ709C8 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
VPS13CQ709C8 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS13CQ709C8 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13CQ709C8 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS13CQ709C8 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS13CQ709C8 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13CQ709C8 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.48■□□□□ 0.71
VPS13CQ709C8 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS13CQ709C8 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
VPS13CQ709C8 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.47■□□□□ 0.71
VPS13CQ709C8 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
VPS13CQ709C8 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13CQ709C8 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.47■□□□□ 0.71
VPS13CQ709C8 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13CQ709C8 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS13CQ709C8 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13CQ709C8 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13CQ709C8 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS13CQ709C8 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13CQ709C8 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13CQ709C8 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13CQ709C8 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13CQ709C8 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS13CQ709C8 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.46■□□□□ 0.71
VPS13CQ709C8 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS13CQ709C8 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS13CQ709C8 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13CQ709C8 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
VPS13CQ709C8 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13CQ709C8 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS13CQ709C8 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13CQ709C8 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13CQ709C8 C17orf82-201ENST00000623772 1530 ntBASIC19.45■□□□□ 0.7
VPS13CQ709C8 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13CQ709C8 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13CQ709C8 SERBP1P1-201ENST00000396021 1160 ntBASIC19.45■□□□□ 0.7
VPS13CQ709C8 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS13CQ709C8 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13CQ709C8 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13CQ709C8 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS13CQ709C8 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13CQ709C8 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS13CQ709C8 RAP2CP1-201ENST00000605103 478 ntBASIC19.45■□□□□ 0.7
VPS13CQ709C8 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS13CQ709C8 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13CQ709C8 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS13CQ709C8 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13CQ709C8 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13CQ709C8 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.44■□□□□ 0.7
VPS13CQ709C8 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13CQ709C8 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS13CQ709C8 ID1-201ENST00000376105 1233 ntBASIC19.43■□□□□ 0.7
VPS13CQ709C8 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13CQ709C8 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS13CQ709C8 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13CQ709C8 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13CQ709C8 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13CQ709C8 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13CQ709C8 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13CQ709C8 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13CQ709C8 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13CQ709C8 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13CQ709C8 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS13CQ709C8 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
VPS13CQ709C8 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13CQ709C8 SLC47A1P1-202ENST00000449666 945 ntBASIC19.43■□□□□ 0.7
VPS13CQ709C8 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS13CQ709C8 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS13CQ709C8 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
VPS13CQ709C8 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13CQ709C8 YBX1P1-201ENST00000445822 960 ntBASIC19.42■□□□□ 0.7
VPS13CQ709C8 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13CQ709C8 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS13CQ709C8 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13CQ709C8 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS13CQ709C8 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13CQ709C8 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13CQ709C8 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS13CQ709C8 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13CQ709C8 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS13CQ709C8 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13CQ709C8 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13CQ709C8 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13CQ709C8 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS13CQ709C8 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS13CQ709C8 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms