Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC30.28■■■□□ 2.44
NCBP3Q53F19 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
NCBP3Q53F19 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
NCBP3Q53F19 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
NCBP3Q53F19 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC30.28■■■□□ 2.44
NCBP3Q53F19 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
NCBP3Q53F19 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
NCBP3Q53F19 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC30.27■■■□□ 2.44
NCBP3Q53F19 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC30.27■■■□□ 2.44
NCBP3Q53F19 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC30.27■■■□□ 2.44
NCBP3Q53F19 AC004448.1-201ENST00000458332 883 ntBASIC30.27■■■□□ 2.44
NCBP3Q53F19 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC30.27■■■□□ 2.44
NCBP3Q53F19 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
NCBP3Q53F19 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
NCBP3Q53F19 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
NCBP3Q53F19 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
NCBP3Q53F19 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC30.26■■■□□ 2.44
NCBP3Q53F19 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
NCBP3Q53F19 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.43
NCBP3Q53F19 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
NCBP3Q53F19 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC30.25■■■□□ 2.43
NCBP3Q53F19 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC30.25■■■□□ 2.43
NCBP3Q53F19 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
NCBP3Q53F19 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
NCBP3Q53F19 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
NCBP3Q53F19 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.25■■■□□ 2.43
NCBP3Q53F19 SHD-204ENST00000599689 1729 ntTSL 5 BASIC30.25■■■□□ 2.43
NCBP3Q53F19 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC30.24■■■□□ 2.43
NCBP3Q53F19 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
NCBP3Q53F19 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
NCBP3Q53F19 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
NCBP3Q53F19 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC30.23■■■□□ 2.43
NCBP3Q53F19 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
NCBP3Q53F19 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
NCBP3Q53F19 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
NCBP3Q53F19 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NCBP3Q53F19 TK2-202ENST00000417693 1046 ntTSL 2 BASIC30.22■■■□□ 2.43
NCBP3Q53F19 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC30.22■■■□□ 2.43
NCBP3Q53F19 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC30.22■■■□□ 2.43
NCBP3Q53F19 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC30.22■■■□□ 2.43
NCBP3Q53F19 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NCBP3Q53F19 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC30.22■■■□□ 2.43
NCBP3Q53F19 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
NCBP3Q53F19 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NCBP3Q53F19 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NCBP3Q53F19 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC30.22■■■□□ 2.43
NCBP3Q53F19 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
NCBP3Q53F19 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
NCBP3Q53F19 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
NCBP3Q53F19 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.21■■■□□ 2.43
NCBP3Q53F19 SENP5-202ENST00000419026 973 ntTSL 3 BASIC30.21■■■□□ 2.43
NCBP3Q53F19 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC30.21■■■□□ 2.43
NCBP3Q53F19 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
NCBP3Q53F19 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
NCBP3Q53F19 AC135731.1-201ENST00000569415 2548 ntBASIC30.21■■■□□ 2.43
NCBP3Q53F19 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC30.21■■■□□ 2.43
NCBP3Q53F19 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
NCBP3Q53F19 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.2■■■□□ 2.43
NCBP3Q53F19 AL451085.2-201ENST00000605085 799 ntBASIC30.2■■■□□ 2.43
NCBP3Q53F19 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
NCBP3Q53F19 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
NCBP3Q53F19 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
NCBP3Q53F19 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
NCBP3Q53F19 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
NCBP3Q53F19 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
NCBP3Q53F19 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
NCBP3Q53F19 DCD-201ENST00000293371 645 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
NCBP3Q53F19 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC30.19■■■□□ 2.42
NCBP3Q53F19 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC30.19■■■□□ 2.42
NCBP3Q53F19 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC30.19■■■□□ 2.42
NCBP3Q53F19 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.19■■■□□ 2.42
NCBP3Q53F19 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
NCBP3Q53F19 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
NCBP3Q53F19 AC004812.2-201ENST00000611079 2094 ntBASIC30.19■■■□□ 2.42
NCBP3Q53F19 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC30.19■■■□□ 2.42
NCBP3Q53F19 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC30.19■■■□□ 2.42
NCBP3Q53F19 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
NCBP3Q53F19 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NCBP3Q53F19 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
NCBP3Q53F19 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC30.18■■■□□ 2.42
NCBP3Q53F19 SNX5-217ENST00000606557 1087 ntBASIC30.18■■■□□ 2.42
NCBP3Q53F19 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC30.18■■■□□ 2.42
NCBP3Q53F19 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
NCBP3Q53F19 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC30.17■■■□□ 2.42
NCBP3Q53F19 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC30.17■■■□□ 2.42
NCBP3Q53F19 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.17■■■□□ 2.42
NCBP3Q53F19 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
NCBP3Q53F19 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
NCBP3Q53F19 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
NCBP3Q53F19 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC30.16■■■□□ 2.42
NCBP3Q53F19 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC30.16■■■□□ 2.42
NCBP3Q53F19 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
NCBP3Q53F19 BX664725.1-201ENST00000438252 379 ntBASIC30.16■■■□□ 2.42
NCBP3Q53F19 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.16■■■□□ 2.42
NCBP3Q53F19 AC009299.2-201ENST00000482477 511 ntBASIC30.16■■■□□ 2.42
NCBP3Q53F19 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
NCBP3Q53F19 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC30.16■■■□□ 2.42
NCBP3Q53F19 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
NCBP3Q53F19 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
NCBP3Q53F19 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC30.15■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms