Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PTCHD3Q3KNS1 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
PTCHD3Q3KNS1 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
PTCHD3Q3KNS1 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.58■■□□□ 1.2
PTCHD3Q3KNS1 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
PTCHD3Q3KNS1 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PTCHD3Q3KNS1 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.57■■□□□ 1.2
PTCHD3Q3KNS1 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PTCHD3Q3KNS1 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PTCHD3Q3KNS1 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PTCHD3Q3KNS1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.57■■□□□ 1.2
PTCHD3Q3KNS1 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
PTCHD3Q3KNS1 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PTCHD3Q3KNS1 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
PTCHD3Q3KNS1 GUSBP5-201ENST00000418136 578 ntBASIC22.56■■□□□ 1.2
PTCHD3Q3KNS1 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PTCHD3Q3KNS1 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
PTCHD3Q3KNS1 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.56■■□□□ 1.2
PTCHD3Q3KNS1 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PTCHD3Q3KNS1 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.55■■□□□ 1.2
PTCHD3Q3KNS1 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PTCHD3Q3KNS1 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PTCHD3Q3KNS1 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 AC239859.2-201ENST00000444165 318 ntBASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 AC011551.1-201ENST00000614101 683 ntBASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PTCHD3Q3KNS1 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.53■■□□□ 1.2
PTCHD3Q3KNS1 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC22.53■■□□□ 1.2
PTCHD3Q3KNS1 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PTCHD3Q3KNS1 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PTCHD3Q3KNS1 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
PTCHD3Q3KNS1 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PTCHD3Q3KNS1 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC22.52■■□□□ 1.2
PTCHD3Q3KNS1 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC22.52■■□□□ 1.2
PTCHD3Q3KNS1 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.52■■□□□ 1.2
PTCHD3Q3KNS1 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
PTCHD3Q3KNS1 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
PTCHD3Q3KNS1 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.19
PTCHD3Q3KNS1 AC004812.2-201ENST00000611079 2094 ntBASIC22.51■■□□□ 1.19
PTCHD3Q3KNS1 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
PTCHD3Q3KNS1 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PTCHD3Q3KNS1 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PTCHD3Q3KNS1 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
PTCHD3Q3KNS1 THA1P-201ENST00000590384 1145 ntBASIC22.51■■□□□ 1.19
PTCHD3Q3KNS1 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC22.51■■□□□ 1.19
PTCHD3Q3KNS1 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
PTCHD3Q3KNS1 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.51■■□□□ 1.19
PTCHD3Q3KNS1 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
PTCHD3Q3KNS1 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PTCHD3Q3KNS1 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PTCHD3Q3KNS1 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PTCHD3Q3KNS1 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22.5■■□□□ 1.19
PTCHD3Q3KNS1 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC22.5■■□□□ 1.19
PTCHD3Q3KNS1 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PTCHD3Q3KNS1 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.5■■□□□ 1.19
PTCHD3Q3KNS1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PTCHD3Q3KNS1 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
PTCHD3Q3KNS1 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PTCHD3Q3KNS1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC22.49■■□□□ 1.19
PTCHD3Q3KNS1 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PTCHD3Q3KNS1 KRT18P24-201ENST00000344739 1156 ntBASIC22.49■■□□□ 1.19
PTCHD3Q3KNS1 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC22.49■■□□□ 1.19
PTCHD3Q3KNS1 AC120024.1-201ENST00000562672 995 ntBASIC22.49■■□□□ 1.19
PTCHD3Q3KNS1 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
PTCHD3Q3KNS1 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
PTCHD3Q3KNS1 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PTCHD3Q3KNS1 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
PTCHD3Q3KNS1 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
PTCHD3Q3KNS1 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.48■■□□□ 1.19
PTCHD3Q3KNS1 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.48■■□□□ 1.19
PTCHD3Q3KNS1 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
PTCHD3Q3KNS1 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.48■■□□□ 1.19
PTCHD3Q3KNS1 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PTCHD3Q3KNS1 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PTCHD3Q3KNS1 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PTCHD3Q3KNS1 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PTCHD3Q3KNS1 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PTCHD3Q3KNS1 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PTCHD3Q3KNS1 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC22.46■■□□□ 1.19
PTCHD3Q3KNS1 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms