Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXF1Q12946 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
FOXF1Q12946 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
FOXF1Q12946 AL035685.1-201ENST00000636663 812 ntBASIC20.94■□□□□ 0.94
FOXF1Q12946 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXF1Q12946 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.94■□□□□ 0.94
FOXF1Q12946 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXF1Q12946 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXF1Q12946 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.93■□□□□ 0.94
FOXF1Q12946 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
FOXF1Q12946 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.93■□□□□ 0.94
FOXF1Q12946 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.93■□□□□ 0.94
FOXF1Q12946 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
FOXF1Q12946 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
FOXF1Q12946 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
FOXF1Q12946 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
FOXF1Q12946 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
FOXF1Q12946 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
FOXF1Q12946 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.92■□□□□ 0.94
FOXF1Q12946 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.92■□□□□ 0.94
FOXF1Q12946 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXF1Q12946 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.92■□□□□ 0.94
FOXF1Q12946 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
FOXF1Q12946 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
FOXF1Q12946 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.92■□□□□ 0.94
FOXF1Q12946 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXF1Q12946 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXF1Q12946 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXF1Q12946 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXF1Q12946 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
FOXF1Q12946 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
FOXF1Q12946 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
FOXF1Q12946 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
FOXF1Q12946 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.91■□□□□ 0.94
FOXF1Q12946 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
FOXF1Q12946 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.91■□□□□ 0.94
FOXF1Q12946 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
FOXF1Q12946 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.91■□□□□ 0.94
FOXF1Q12946 LINC00543-201ENST00000567234 1845 ntBASIC20.91■□□□□ 0.94
FOXF1Q12946 AC131274.2-201ENST00000580697 1507 ntBASIC20.91■□□□□ 0.94
FOXF1Q12946 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.91■□□□□ 0.94
FOXF1Q12946 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXF1Q12946 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.9■□□□□ 0.94
FOXF1Q12946 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXF1Q12946 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
FOXF1Q12946 AC021242.3-201ENST00000607598 1377 ntBASIC20.9■□□□□ 0.94
FOXF1Q12946 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXF1Q12946 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
FOXF1Q12946 Z92544.1-202ENST00000571933 1220 ntBASIC20.9■□□□□ 0.94
FOXF1Q12946 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.9■□□□□ 0.94
FOXF1Q12946 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.9■□□□□ 0.94
FOXF1Q12946 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.9■□□□□ 0.94
FOXF1Q12946 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
FOXF1Q12946 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
FOXF1Q12946 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.9■□□□□ 0.94
FOXF1Q12946 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
FOXF1Q12946 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.89■□□□□ 0.94
FOXF1Q12946 AC141586.4-201ENST00000624558 1573 ntBASIC20.89■□□□□ 0.94
FOXF1Q12946 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
FOXF1Q12946 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
FOXF1Q12946 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.89■□□□□ 0.93
FOXF1Q12946 AC239859.2-201ENST00000444165 318 ntBASIC20.89■□□□□ 0.93
FOXF1Q12946 KRT125P-201ENST00000546827 989 ntBASIC20.89■□□□□ 0.93
FOXF1Q12946 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
FOXF1Q12946 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.89■□□□□ 0.93
FOXF1Q12946 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
FOXF1Q12946 AL022069.1-201ENST00000568025 1636 ntBASIC20.89■□□□□ 0.93
FOXF1Q12946 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
FOXF1Q12946 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
FOXF1Q12946 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
FOXF1Q12946 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
FOXF1Q12946 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.88■□□□□ 0.93
FOXF1Q12946 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.88■□□□□ 0.93
FOXF1Q12946 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
FOXF1Q12946 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.88■□□□□ 0.93
FOXF1Q12946 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
FOXF1Q12946 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
FOXF1Q12946 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
FOXF1Q12946 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
FOXF1Q12946 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
FOXF1Q12946 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
FOXF1Q12946 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.87■□□□□ 0.93
FOXF1Q12946 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
FOXF1Q12946 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
FOXF1Q12946 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
FOXF1Q12946 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
FOXF1Q12946 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
FOXF1Q12946 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.86■□□□□ 0.93
FOXF1Q12946 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.86■□□□□ 0.93
FOXF1Q12946 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.86■□□□□ 0.93
FOXF1Q12946 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
FOXF1Q12946 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
FOXF1Q12946 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
FOXF1Q12946 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
FOXF1Q12946 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXF1Q12946 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXF1Q12946 MIR4787-201ENST00000607364 84 ntBASIC20.85■□□□□ 0.93
FOXF1Q12946 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
FOXF1Q12946 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.85■□□□□ 0.93
FOXF1Q12946 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms