Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 GSDMB-204ENST00000394179 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.043e-8■■■■□ 24.8
LSM11P83369 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.313e-8■■■■□ 24.8
LSM11P83369 FASN-210ENST00000636968 100 ntTSL 514.63□□□□□ -0.076e-8■■■■□ 24.8
LSM11P83369 FASN-208ENST00000635733 100 ntTSL 57.66□□□□□ -1.186e-8■■■■□ 24.8
LSM11P83369 SETBP1-201ENST00000282030 9899 ntAPPRIS P3 TSL 1 (best) BASIC8.75□□□□□ -1.013e-11■■■■□ 24.8
LSM11P83369 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.721e-8■■■■□ 24.8
LSM11P83369 PIGQ-218ENST00000635909 2212 ntTSL 517.76■□□□□ 0.434e-6■■■■□ 24.8
LSM11P83369 PIGQ-210ENST00000476438 1775 ntTSL 217.35■□□□□ 0.374e-6■■■■□ 24.8
LSM11P83369 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.324e-6■■■■□ 24.8
LSM11P83369 AC024592.3-201ENST00000592091 2118 ntTSL 216.52■□□□□ 0.246e-8■■■■□ 24.8
LSM11P83369 PIGQ-211ENST00000480424 2202 ntTSL 216.51■□□□□ 0.234e-6■■■■□ 24.8
LSM11P83369 FADS1-215ENST00000541683 1844 ntTSL 216.03■□□□□ 0.162e-6■■■■□ 24.8
LSM11P83369 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.92■□□□□ 0.144e-6■■■■□ 24.8
LSM11P83369 FADS1-217ENST00000544309 581 ntTSL 315.89■□□□□ 0.132e-6■■■■□ 24.8
LSM11P83369 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.72■□□□□ 0.116e-8■■■■□ 24.8
LSM11P83369 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.076e-8■■■■□ 24.8
LSM11P83369 PIGQ-221ENST00000636657 2841 ntTSL 515.3■□□□□ 0.044e-6■■■■□ 24.8
LSM11P83369 FADS1-202ENST00000421879 583 ntTSL 315.11■□□□□ 0.012e-6■■■■□ 24.8
LSM11P83369 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.56□□□□□ -0.086e-8■■■■□ 24.8
LSM11P83369 AC024592.3-203ENST00000585661 431 ntAPPRIS P1 TSL 214.56□□□□□ -0.086e-8■■■■□ 24.8
LSM11P83369 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.4□□□□□ -0.16e-8■■■■□ 24.8
LSM11P83369 NDUFA11-204ENST00000591341 403 ntTSL 214.01□□□□□ -0.176e-8■■■■□ 24.8
LSM11P83369 NDUFA11-206ENST00000593233 657 ntTSL 314.01□□□□□ -0.176e-8■■■■□ 24.8
LSM11P83369 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.232e-6■■■■□ 24.8
LSM11P83369 FADS1-209ENST00000491310 525 ntTSL 512.66□□□□□ -0.382e-6■■■■□ 24.8
LSM11P83369 SGTA-204ENST00000589251 637 ntTSL 311.9□□□□□ -0.51e-6■■■■□ 24.8
LSM11P83369 FADS1-203ENST00000424501 926 ntTSL 311.49□□□□□ -0.572e-6■■■■□ 24.8
LSM11P83369 FADS1-205ENST00000448607 559 ntTSL 411.06□□□□□ -0.642e-6■■■■□ 24.8
LSM11P83369 SMC3-201ENST00000361804 4114 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.781e-6■■■■□ 24.7
LSM11P83369 SMC3-202ENST00000462899 777 ntTSL 59.18□□□□□ -0.941e-6■■■■□ 24.7
LSM11P83369 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.091e-7■■■■□ 24.7
LSM11P83369 ATAD3B-205ENST00000485748 3233 ntTSL 214.23□□□□□ -0.131e-7■■■■□ 24.7
LSM11P83369 ATAD3B-204ENST00000474481 3367 ntTSL 213.65□□□□□ -0.221e-7■■■■□ 24.7
LSM11P83369 ATAD3B-203ENST00000472194 4314 ntTSL 1 (best)10.91□□□□□ -0.661e-7■■■■□ 24.7
LSM11P83369 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.071e-7■■■■□ 24.7
LSM11P83369 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.891e-7■■■■□ 24.7
LSM11P83369 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.621e-7■■■■□ 24.7
LSM11P83369 PTOV1-209ENST00000597793 1716 ntTSL 1 (best)17.58■□□□□ 0.411e-7■■■■□ 24.7
LSM11P83369 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.52□□□□□ -0.081e-7■■■■□ 24.7
LSM11P83369 PTOV1-210ENST00000598325 1438 ntTSL 513.92□□□□□ -0.181e-7■■■■□ 24.7
LSM11P83369 PTOV1-208ENST00000597730 327 ntTSL 213.42□□□□□ -0.261e-7■■■■□ 24.7
LSM11P83369 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.22□□□□□ -0.291e-7■■■■□ 24.7
LSM11P83369 PTOV1-218ENST00000601612 1480 ntTSL 211.9□□□□□ -0.51e-7■■■■□ 24.7
LSM11P83369 PTOV1-216ENST00000601093 522 ntTSL 210.27□□□□□ -0.771e-7■■■■□ 24.7
LSM11P83369 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.35■□□□□ 0.535e-6■■■■□ 24.7
LSM11P83369 FBRS-208ENST00000543786 2890 ntTSL 213.75□□□□□ -0.215e-6■■■■□ 24.7
LSM11P83369 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.225e-6■■■■□ 24.7
LSM11P83369 FBRS-206ENST00000494101 2782 ntTSL 212.6□□□□□ -0.395e-6■■■■□ 24.7
LSM11P83369 MVD-202ENST00000561895 499 ntTSL 211.53□□□□□ -0.562e-11■■■■□ 24.6
LSM11P83369 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.651e-8■■■■□ 24.6
LSM11P83369 RCN3-202ENST00000593483 595 ntTSL 513.64□□□□□ -0.231e-8■■■■□ 24.6
LSM11P83369 RCN3-205ENST00000598833 607 ntTSL 313.23□□□□□ -0.291e-8■■■■□ 24.6
LSM11P83369 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.471e-7■■■■□ 24.5
LSM11P83369 TNK2-216ENST00000468819 876 ntTSL 1 (best)18.28■□□□□ 0.521e-7■■■■□ 24.5
LSM11P83369 C19orf25-209ENST00000590621 885 ntTSL 311.79□□□□□ -0.523e-6■■■■□ 24.5
LSM11P83369 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.842e-7■■■■□ 24.4
LSM11P83369 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.242e-7■■■■□ 24.4
LSM11P83369 WDR59-216ENST00000569183 949 ntTSL 211.56□□□□□ -0.562e-8■■■■□ 24.4
LSM11P83369 EMSY-216ENST00000533972 452 ntTSL 39.63□□□□□ -0.871e-9■■■■□ 24.3
LSM11P83369 EMSY-202ENST00000427574 2415 ntTSL 1 (best)7.54□□□□□ -1.21e-9■■■■□ 24.3
LSM11P83369 RBM10-206ENST00000628161 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.391e-9■■■■□ 24.3
LSM11P83369 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.411e-9■■■■□ 24.3
LSM11P83369 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.421e-9■■■■□ 24.3
LSM11P83369 RBM10-205ENST00000496012 509 ntTSL 512.33□□□□□ -0.441e-9■■■■□ 24.3
LSM11P83369 RBM10-203ENST00000377604 3747 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.681e-9■■■■□ 24.3
LSM11P83369 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.659e-7■■■■□ 24.3
LSM11P83369 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.619e-7■■■■□ 24.3
LSM11P83369 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.44■□□□□ 0.549e-7■■■■□ 24.3
LSM11P83369 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.459e-7■■■■□ 24.3
LSM11P83369 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.57■□□□□ 0.43e-6■■■■□ 24.3
LSM11P83369 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.49e-7■■■■□ 24.3
LSM11P83369 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.43e-6■■■■□ 24.3
LSM11P83369 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.32■□□□□ 0.369e-7■■■■□ 24.3
LSM11P83369 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.369e-7■■■■□ 24.3
LSM11P83369 MAEA-209ENST00000506530 5371 ntTSL 217.28■□□□□ 0.369e-7■■■■□ 24.3
LSM11P83369 MAEA-212ENST00000509531 1001 ntTSL 1 (best)17.16■□□□□ 0.349e-7■■■■□ 24.3
LSM11P83369 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.08■□□□□ 0.323e-6■■■■□ 24.3
LSM11P83369 NECAB3-217ENST00000606106 591 ntTSL 417.08■□□□□ 0.321e-7■■■■□ 24.3
LSM11P83369 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17■□□□□ 0.319e-7■■■■□ 24.3
LSM11P83369 NR1H2-203ENST00000593532 2380 ntTSL 216.62■□□□□ 0.259e-7■■■■□ 24.3
LSM11P83369 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.41■□□□□ 0.229e-7■■■■□ 24.3
LSM11P83369 MAEA-215ENST00000512289 2426 ntTSL 216.3■□□□□ 0.29e-7■■■■□ 24.3
LSM11P83369 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.169e-7■■■■□ 24.3
LSM11P83369 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.093e-6■■■■□ 24.3
LSM11P83369 C19orf25-211ENST00000592486 2314 nt15.07■□□□□ 03e-6■■■■□ 24.3
LSM11P83369 MAEA-203ENST00000502558 570 ntTSL 214.74□□□□□ -0.059e-7■■■■□ 24.3
LSM11P83369 NECAB3-208ENST00000480994 732 ntTSL 514.65□□□□□ -0.061e-7■■■■□ 24.3
LSM11P83369 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.244e-6■■■■□ 24.3
LSM11P83369 GRK2-202ENST00000416281 4493 ntTSL 212.73□□□□□ -0.379e-7■■■■□ 24.3
LSM11P83369 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC12.08□□□□□ -0.489e-7■■■■□ 24.3
LSM11P83369 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC12□□□□□ -0.499e-7■■■■□ 24.3
LSM11P83369 MAEA-205ENST00000503653 845 ntTSL 311.28□□□□□ -0.69e-7■■■■□ 24.3
LSM11P83369 C1orf52-201ENST00000294661 3391 ntTSL 1 (best)9.78□□□□□ -0.849e-7■■■■□ 24.3
LSM11P83369 RNF149-202ENST00000424632 2010 ntTSL 219■□□□□ 0.631e-7■■■■□ 24.3
LSM11P83369 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17■□□□□ 0.311e-7■■■■□ 24.3
LSM11P83369 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.31e-7■■■■□ 24.3
LSM11P83369 PIGZ-203ENST00000413127 1947 ntTSL 216.58■□□□□ 0.241e-7■■■■□ 24.3
LSM11P83369 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.071e-7■■■■□ 24.3
LSM11P83369 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.111e-7■■■■□ 24.3
LSM11P83369 RNF149-205ENST00000485752 621 ntTSL 514.24□□□□□ -0.131e-7■■■■□ 24.3
Retrieved 100 of 11,495 protein–RNA pairs in 58.4 ms