Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA3P55318 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
FOXA3P55318 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
FOXA3P55318 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC17.27■□□□□ 0.35
FOXA3P55318 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.27■□□□□ 0.35
FOXA3P55318 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA3P55318 AC087741.3-201ENST00000624270 1347 ntBASIC17.26■□□□□ 0.35
FOXA3P55318 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA3P55318 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA3P55318 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC17.26■□□□□ 0.35
FOXA3P55318 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA3P55318 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA3P55318 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
FOXA3P55318 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC17.26■□□□□ 0.35
FOXA3P55318 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
FOXA3P55318 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA3P55318 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
FOXA3P55318 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.25■□□□□ 0.35
FOXA3P55318 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA3P55318 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA3P55318 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA3P55318 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA3P55318 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA3P55318 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
FOXA3P55318 AC021231.2-201ENST00000594613 730 ntBASIC17.25■□□□□ 0.35
FOXA3P55318 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA3P55318 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC17.25■□□□□ 0.35
FOXA3P55318 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
FOXA3P55318 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA3P55318 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
FOXA3P55318 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA3P55318 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.24■□□□□ 0.35
FOXA3P55318 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA3P55318 AP006261.1-201ENST00000584783 668 ntBASIC17.24■□□□□ 0.35
FOXA3P55318 HLA-L-211ENST00000482052 1765 ntBASIC17.24■□□□□ 0.35
FOXA3P55318 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
FOXA3P55318 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.24■□□□□ 0.35
FOXA3P55318 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.24■□□□□ 0.35
FOXA3P55318 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA3P55318 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA3P55318 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA3P55318 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA3P55318 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
FOXA3P55318 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA3P55318 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXA3P55318 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
FOXA3P55318 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA3P55318 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA3P55318 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXA3P55318 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA3P55318 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA3P55318 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
FOXA3P55318 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA3P55318 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
FOXA3P55318 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
FOXA3P55318 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC17.22■□□□□ 0.35
FOXA3P55318 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
FOXA3P55318 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA3P55318 CHML-204ENST00000638121 920 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXA3P55318 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA3P55318 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA3P55318 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA3P55318 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA3P55318 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA3P55318 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA3P55318 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA3P55318 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA3P55318 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXA3P55318 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17.21■□□□□ 0.35
FOXA3P55318 AL024507.2-201ENST00000606070 2574 ntBASIC17.21■□□□□ 0.35
FOXA3P55318 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
FOXA3P55318 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA3P55318 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA3P55318 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA3P55318 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA3P55318 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
FOXA3P55318 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA3P55318 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA3P55318 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
FOXA3P55318 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA3P55318 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA3P55318 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
FOXA3P55318 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA3P55318 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA3P55318 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC17.19■□□□□ 0.34
FOXA3P55318 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA3P55318 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA3P55318 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
FOXA3P55318 NRG1-221ENST00000614767 762 ntTSL 5 BASIC17.19■□□□□ 0.34
FOXA3P55318 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA3P55318 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
FOXA3P55318 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
FOXA3P55318 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA3P55318 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
FOXA3P55318 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA3P55318 AC127496.7-201ENST00000625110 1798 ntBASIC17.18■□□□□ 0.34
FOXA3P55318 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
FOXA3P55318 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.18■□□□□ 0.34
FOXA3P55318 CHST11-203ENST00000547956 936 ntTSL 2 BASIC17.18■□□□□ 0.34
FOXA3P55318 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms