Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
COL18A1P39060 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC31.08■■■□□ 2.57
COL18A1P39060 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL18A1P39060 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
COL18A1P39060 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
COL18A1P39060 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
COL18A1P39060 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
COL18A1P39060 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
COL18A1P39060 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC31.07■■■□□ 2.56
COL18A1P39060 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
COL18A1P39060 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC31.07■■■□□ 2.56
COL18A1P39060 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC31.07■■■□□ 2.56
COL18A1P39060 CA15P2-201ENST00000611168 834 ntBASIC31.07■■■□□ 2.56
COL18A1P39060 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
COL18A1P39060 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
COL18A1P39060 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
COL18A1P39060 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
COL18A1P39060 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC31.06■■■□□ 2.56
COL18A1P39060 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
COL18A1P39060 PLD4-205ENST00000553861 667 ntTSL 2 BASIC31.05■■■□□ 2.56
COL18A1P39060 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
COL18A1P39060 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC31.05■■■□□ 2.56
COL18A1P39060 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
COL18A1P39060 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
COL18A1P39060 AC011298.3-201ENST00000615796 283 ntBASIC31.05■■■□□ 2.56
COL18A1P39060 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC31.04■■■□□ 2.56
COL18A1P39060 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL18A1P39060 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL18A1P39060 RBM38-205ENST00000440234 686 ntTSL 2 BASIC31.04■■■□□ 2.56
COL18A1P39060 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC31.04■■■□□ 2.56
COL18A1P39060 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL18A1P39060 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL18A1P39060 RASA4CP-201ENST00000424092 1398 ntBASIC31.03■■■□□ 2.56
COL18A1P39060 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
COL18A1P39060 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
COL18A1P39060 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC31.03■■■□□ 2.56
COL18A1P39060 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC31.03■■■□□ 2.56
COL18A1P39060 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
COL18A1P39060 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL18A1P39060 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL18A1P39060 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
COL18A1P39060 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
COL18A1P39060 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
COL18A1P39060 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
COL18A1P39060 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL18A1P39060 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC31.02■■■□□ 2.56
COL18A1P39060 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
COL18A1P39060 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL18A1P39060 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
COL18A1P39060 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
COL18A1P39060 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
COL18A1P39060 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.55
COL18A1P39060 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
COL18A1P39060 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC31.01■■■□□ 2.55
COL18A1P39060 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
COL18A1P39060 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
COL18A1P39060 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
COL18A1P39060 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC31■■■□□ 2.55
COL18A1P39060 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC31■■■□□ 2.55
COL18A1P39060 AL162430.1-201ENST00000480705 870 ntBASIC31■■■□□ 2.55
COL18A1P39060 AC027682.1-201ENST00000562846 899 ntBASIC31■■■□□ 2.55
COL18A1P39060 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC31■■■□□ 2.55
COL18A1P39060 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC31■■■□□ 2.55
COL18A1P39060 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC31■■■□□ 2.55
COL18A1P39060 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC31■■■□□ 2.55
COL18A1P39060 SYT6-210ENST00000641643 1587 ntBASIC30.99■■■□□ 2.55
COL18A1P39060 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
COL18A1P39060 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC30.99■■■□□ 2.55
COL18A1P39060 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL18A1P39060 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL18A1P39060 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
COL18A1P39060 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
COL18A1P39060 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC30.97■■■□□ 2.55
COL18A1P39060 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC30.97■■■□□ 2.55
COL18A1P39060 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL18A1P39060 C17orf82-201ENST00000623772 1530 ntBASIC30.96■■■□□ 2.55
COL18A1P39060 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
COL18A1P39060 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL18A1P39060 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL18A1P39060 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC30.96■■■□□ 2.55
COL18A1P39060 AC099791.2-201ENST00000605725 427 ntBASIC30.96■■■□□ 2.55
COL18A1P39060 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL18A1P39060 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
COL18A1P39060 SHF-206ENST00000560471 2499 ntTSL 5 BASIC30.96■■■□□ 2.55
COL18A1P39060 PKM-203ENST00000389093 2279 ntTSL 5 BASIC30.95■■■□□ 2.55
COL18A1P39060 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC30.95■■■□□ 2.55
COL18A1P39060 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.55
COL18A1P39060 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.55
COL18A1P39060 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC30.95■■■□□ 2.54
COL18A1P39060 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL18A1P39060 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL18A1P39060 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
COL18A1P39060 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC30.94■■■□□ 2.54
COL18A1P39060 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
COL18A1P39060 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
COL18A1P39060 RHOF-204ENST00000537265 699 ntTSL 2 BASIC30.94■■■□□ 2.54
COL18A1P39060 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
COL18A1P39060 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC30.93■■■□□ 2.54
COL18A1P39060 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC30.93■■■□□ 2.54
COL18A1P39060 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms