Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXD4P09016 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXD4P09016 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXD4P09016 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.89■□□□□ 0.93
HOXD4P09016 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.89■□□□□ 0.93
HOXD4P09016 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.89■□□□□ 0.93
HOXD4P09016 AL117332.1-201ENST00000622628 974 ntBASIC20.89■□□□□ 0.93
HOXD4P09016 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXD4P09016 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXD4P09016 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.88■□□□□ 0.93
HOXD4P09016 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXD4P09016 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXD4P09016 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXD4P09016 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXD4P09016 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXD4P09016 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.88■□□□□ 0.93
HOXD4P09016 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXD4P09016 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXD4P09016 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXD4P09016 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
HOXD4P09016 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.87■□□□□ 0.93
HOXD4P09016 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXD4P09016 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.87■□□□□ 0.93
HOXD4P09016 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXD4P09016 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.87■□□□□ 0.93
HOXD4P09016 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
HOXD4P09016 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXD4P09016 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.87■□□□□ 0.93
HOXD4P09016 MIR6722-201ENST00000617286 78 ntBASIC20.87■□□□□ 0.93
HOXD4P09016 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXD4P09016 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXD4P09016 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXD4P09016 AC096887.2-201ENST00000623443 1957 ntBASIC20.86■□□□□ 0.93
HOXD4P09016 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
HOXD4P09016 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
HOXD4P09016 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXD4P09016 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.86■□□□□ 0.93
HOXD4P09016 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.86■□□□□ 0.93
HOXD4P09016 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXD4P09016 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.86■□□□□ 0.93
HOXD4P09016 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.86■□□□□ 0.93
HOXD4P09016 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXD4P09016 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXD4P09016 CLDN5-201ENST00000403084 2357 ntBASIC20.85■□□□□ 0.93
HOXD4P09016 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HOXD4P09016 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXD4P09016 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.85■□□□□ 0.93
HOXD4P09016 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.85■□□□□ 0.93
HOXD4P09016 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.85■□□□□ 0.93
HOXD4P09016 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.85■□□□□ 0.93
HOXD4P09016 AC131281.2-201ENST00000520478 145 ntBASIC20.85■□□□□ 0.93
HOXD4P09016 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HOXD4P09016 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
HOXD4P09016 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HOXD4P09016 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
HOXD4P09016 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXD4P09016 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HOXD4P09016 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.84■□□□□ 0.93
HOXD4P09016 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXD4P09016 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
HOXD4P09016 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
HOXD4P09016 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXD4P09016 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXD4P09016 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HOXD4P09016 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.83■□□□□ 0.93
HOXD4P09016 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.83■□□□□ 0.93
HOXD4P09016 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HOXD4P09016 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXD4P09016 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXD4P09016 ERN1-208ENST00000606895 2068 ntBASIC20.82■□□□□ 0.92
HOXD4P09016 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXD4P09016 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.82■□□□□ 0.92
HOXD4P09016 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.82■□□□□ 0.92
HOXD4P09016 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXD4P09016 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXD4P09016 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXD4P09016 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HOXD4P09016 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXD4P09016 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.81■□□□□ 0.92
HOXD4P09016 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
HOXD4P09016 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXD4P09016 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.81■□□□□ 0.92
HOXD4P09016 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HOXD4P09016 AL136116.3-201ENST00000402907 1138 ntBASIC20.81■□□□□ 0.92
HOXD4P09016 SNX5-217ENST00000606557 1087 ntBASIC20.81■□□□□ 0.92
HOXD4P09016 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD4P09016 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD4P09016 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD4P09016 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
HOXD4P09016 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
HOXD4P09016 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.8■□□□□ 0.92
HOXD4P09016 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD4P09016 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD4P09016 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.8■□□□□ 0.92
HOXD4P09016 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD4P09016 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
HOXD4P09016 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HOXD4P09016 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
HOXD4P09016 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD4P09016 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms