Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.53■■□□□ 1.04
PRKNO60260 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRKNO60260 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
PRKNO60260 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.53■■□□□ 1.04
PRKNO60260 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.53■■□□□ 1.04
PRKNO60260 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PRKNO60260 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
PRKNO60260 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRKNO60260 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.52■■□□□ 1.04
PRKNO60260 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRKNO60260 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
PRKNO60260 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PRKNO60260 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PRKNO60260 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
PRKNO60260 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.51■■□□□ 1.03
PRKNO60260 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.51■■□□□ 1.03
PRKNO60260 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
PRKNO60260 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PRKNO60260 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PRKNO60260 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PRKNO60260 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.51■■□□□ 1.03
PRKNO60260 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PRKNO60260 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.51■■□□□ 1.03
PRKNO60260 AL356441.2-201ENST00000443009 864 ntBASIC21.51■■□□□ 1.03
PRKNO60260 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRKNO60260 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRKNO60260 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRKNO60260 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.5■■□□□ 1.03
PRKNO60260 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRKNO60260 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PRKNO60260 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
PRKNO60260 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PRKNO60260 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.49■■□□□ 1.03
PRKNO60260 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
PRKNO60260 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.49■■□□□ 1.03
PRKNO60260 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.49■■□□□ 1.03
PRKNO60260 AP003733.4-201ENST00000623785 1697 ntBASIC21.48■■□□□ 1.03
PRKNO60260 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.48■■□□□ 1.03
PRKNO60260 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.48■■□□□ 1.03
PRKNO60260 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.48■■□□□ 1.03
PRKNO60260 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.48■■□□□ 1.03
PRKNO60260 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.48■■□□□ 1.03
PRKNO60260 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.48■■□□□ 1.03
PRKNO60260 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.47■■□□□ 1.03
PRKNO60260 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRKNO60260 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRKNO60260 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
PRKNO60260 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
PRKNO60260 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PRKNO60260 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRKNO60260 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
PRKNO60260 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRKNO60260 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.47■■□□□ 1.03
PRKNO60260 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.47■■□□□ 1.03
PRKNO60260 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.47■■□□□ 1.03
PRKNO60260 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.47■■□□□ 1.03
PRKNO60260 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.47■■□□□ 1.03
PRKNO60260 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.47■■□□□ 1.03
PRKNO60260 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.47■■□□□ 1.03
PRKNO60260 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
PRKNO60260 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRKNO60260 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRKNO60260 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PRKNO60260 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.46■■□□□ 1.03
PRKNO60260 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.46■■□□□ 1.03
PRKNO60260 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.46■■□□□ 1.03
PRKNO60260 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PRKNO60260 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRKNO60260 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRKNO60260 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRKNO60260 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.46■■□□□ 1.03
PRKNO60260 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
PRKNO60260 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.45■■□□□ 1.02
PRKNO60260 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PRKNO60260 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PRKNO60260 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.45■■□□□ 1.02
PRKNO60260 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.45■■□□□ 1.02
PRKNO60260 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.45■■□□□ 1.02
PRKNO60260 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PRKNO60260 AL139125.2-201ENST00000623134 1869 ntBASIC21.45■■□□□ 1.02
PRKNO60260 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PRKNO60260 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.44■■□□□ 1.02
PRKNO60260 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.44■■□□□ 1.02
PRKNO60260 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
PRKNO60260 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRKNO60260 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
PRKNO60260 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.44■■□□□ 1.02
PRKNO60260 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PRKNO60260 KRT16P3-201ENST00000439127 1283 ntBASIC21.44■■□□□ 1.02
PRKNO60260 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
PRKNO60260 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.44■■□□□ 1.02
PRKNO60260 SNX5-217ENST00000606557 1087 ntBASIC21.44■■□□□ 1.02
PRKNO60260 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PRKNO60260 LINC01124-201ENST00000409786 2117 ntBASIC21.44■■□□□ 1.02
PRKNO60260 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PRKNO60260 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PRKNO60260 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.43■■□□□ 1.02
PRKNO60260 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PRKNO60260 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
PRKNO60260 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms