Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1AO00555 MIR4651-201ENST00000582622 73 ntBASIC22.38■■□□□ 1.17
CACNA1AO00555 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CACNA1AO00555 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
CACNA1AO00555 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1AO00555 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1AO00555 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC22.37■■□□□ 1.17
CACNA1AO00555 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CACNA1AO00555 WDR88-203ENST00000592765 651 ntTSL 5 BASIC22.37■■□□□ 1.17
CACNA1AO00555 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
CACNA1AO00555 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.36■■□□□ 1.17
CACNA1AO00555 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22.36■■□□□ 1.17
CACNA1AO00555 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC22.36■■□□□ 1.17
CACNA1AO00555 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
CACNA1AO00555 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC22.36■■□□□ 1.17
CACNA1AO00555 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CACNA1AO00555 GRAMD4P2-201ENST00000423297 1097 ntBASIC22.35■■□□□ 1.17
CACNA1AO00555 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC22.35■■□□□ 1.17
CACNA1AO00555 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.35■■□□□ 1.17
CACNA1AO00555 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CACNA1AO00555 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
CACNA1AO00555 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CACNA1AO00555 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
CACNA1AO00555 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
CACNA1AO00555 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC22.34■■□□□ 1.17
CACNA1AO00555 AC005703.6-201ENST00000623265 1329 ntBASIC22.34■■□□□ 1.17
CACNA1AO00555 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CACNA1AO00555 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
CACNA1AO00555 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CACNA1AO00555 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CACNA1AO00555 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC22.33■■□□□ 1.17
CACNA1AO00555 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.17
CACNA1AO00555 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.33■■□□□ 1.17
CACNA1AO00555 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
CACNA1AO00555 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CACNA1AO00555 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CACNA1AO00555 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CACNA1AO00555 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
CACNA1AO00555 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
CACNA1AO00555 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC22.32■■□□□ 1.16
CACNA1AO00555 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.32■■□□□ 1.16
CACNA1AO00555 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.32■■□□□ 1.16
CACNA1AO00555 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CACNA1AO00555 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
CACNA1AO00555 AC006970.2-201ENST00000450065 779 ntBASIC22.32■■□□□ 1.16
CACNA1AO00555 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC22.32■■□□□ 1.16
CACNA1AO00555 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC22.32■■□□□ 1.16
CACNA1AO00555 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
CACNA1AO00555 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CACNA1AO00555 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CACNA1AO00555 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1AO00555 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC22.31■■□□□ 1.16
CACNA1AO00555 KRT18P61-201ENST00000585825 1298 ntBASIC22.31■■□□□ 1.16
CACNA1AO00555 AC099791.2-201ENST00000605725 427 ntBASIC22.31■■□□□ 1.16
CACNA1AO00555 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC22.31■■□□□ 1.16
CACNA1AO00555 GAMT-205ENST00000640762 751 ntTSL 5 BASIC22.31■■□□□ 1.16
CACNA1AO00555 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1AO00555 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1AO00555 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.31■■□□□ 1.16
CACNA1AO00555 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC22.31■■□□□ 1.16
CACNA1AO00555 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CACNA1AO00555 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CACNA1AO00555 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CACNA1AO00555 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.3■■□□□ 1.16
CACNA1AO00555 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC22.3■■□□□ 1.16
CACNA1AO00555 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CACNA1AO00555 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CACNA1AO00555 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CACNA1AO00555 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
CACNA1AO00555 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CACNA1AO00555 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.29■■□□□ 1.16
CACNA1AO00555 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
CACNA1AO00555 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CACNA1AO00555 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CACNA1AO00555 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC22.29■■□□□ 1.16
CACNA1AO00555 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CACNA1AO00555 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22.29■■□□□ 1.16
CACNA1AO00555 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CACNA1AO00555 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC22.28■■□□□ 1.16
CACNA1AO00555 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CACNA1AO00555 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
CACNA1AO00555 TSPY26P-201ENST00000476365 1326 ntBASIC22.28■■□□□ 1.16
CACNA1AO00555 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.27■■□□□ 1.16
CACNA1AO00555 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
CACNA1AO00555 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1AO00555 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CACNA1AO00555 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1AO00555 KRT18P6-201ENST00000555540 1265 ntBASIC22.27■■□□□ 1.16
CACNA1AO00555 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1AO00555 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC22.27■■□□□ 1.16
CACNA1AO00555 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.26■■□□□ 1.15
CACNA1AO00555 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
CACNA1AO00555 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CACNA1AO00555 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.26■■□□□ 1.15
CACNA1AO00555 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
CACNA1AO00555 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC22.26■■□□□ 1.15
CACNA1AO00555 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC22.26■■□□□ 1.15
CACNA1AO00555 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC22.26■■□□□ 1.15
CACNA1AO00555 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.26■■□□□ 1.15
CACNA1AO00555 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms