Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SLC28A1O00337 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC28A1O00337 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SLC28A1O00337 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SLC28A1O00337 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.22■■□□□ 1.15
SLC28A1O00337 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
SLC28A1O00337 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.22■■□□□ 1.15
SLC28A1O00337 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC28A1O00337 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC28A1O00337 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC28A1O00337 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.22■■□□□ 1.15
SLC28A1O00337 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.22■■□□□ 1.15
SLC28A1O00337 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC28A1O00337 U85056.1-201ENST00000616429 682 ntBASIC22.21■■□□□ 1.15
SLC28A1O00337 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC22.21■■□□□ 1.15
SLC28A1O00337 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SLC28A1O00337 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SLC28A1O00337 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SLC28A1O00337 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SLC28A1O00337 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.15
SLC28A1O00337 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC28A1O00337 HSD17B1P1-201ENST00000590052 955 ntBASIC22.2■■□□□ 1.14
SLC28A1O00337 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC28A1O00337 AL161729.1-201ENST00000604104 1402 ntBASIC22.2■■□□□ 1.14
SLC28A1O00337 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC28A1O00337 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SLC28A1O00337 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SLC28A1O00337 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SLC28A1O00337 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.19■■□□□ 1.14
SLC28A1O00337 LONRF2P2-201ENST00000439212 571 ntBASIC22.19■■□□□ 1.14
SLC28A1O00337 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SLC28A1O00337 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SLC28A1O00337 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
SLC28A1O00337 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
SLC28A1O00337 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.18■■□□□ 1.14
SLC28A1O00337 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC22.18■■□□□ 1.14
SLC28A1O00337 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SLC28A1O00337 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
SLC28A1O00337 AC129492.7-201ENST00000622992 756 ntBASIC22.18■■□□□ 1.14
SLC28A1O00337 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SLC28A1O00337 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC22.18■■□□□ 1.14
SLC28A1O00337 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SLC28A1O00337 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
SLC28A1O00337 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
SLC28A1O00337 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.18■■□□□ 1.14
SLC28A1O00337 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.17■■□□□ 1.14
SLC28A1O00337 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SLC28A1O00337 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
SLC28A1O00337 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SLC28A1O00337 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SLC28A1O00337 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SLC28A1O00337 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.17■■□□□ 1.14
SLC28A1O00337 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.17■■□□□ 1.14
SLC28A1O00337 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.16■■□□□ 1.14
SLC28A1O00337 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
SLC28A1O00337 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SLC28A1O00337 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
SLC28A1O00337 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22.16■■□□□ 1.14
SLC28A1O00337 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.16■■□□□ 1.14
SLC28A1O00337 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SLC28A1O00337 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.16■■□□□ 1.14
SLC28A1O00337 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SLC28A1O00337 AC012676.1-201ENST00000574705 1949 ntBASIC22.16■■□□□ 1.14
SLC28A1O00337 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
SLC28A1O00337 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.15■■□□□ 1.14
SLC28A1O00337 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SLC28A1O00337 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SLC28A1O00337 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
SLC28A1O00337 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.15■■□□□ 1.14
SLC28A1O00337 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.15■■□□□ 1.14
SLC28A1O00337 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SLC28A1O00337 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
SLC28A1O00337 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.15■■□□□ 1.14
SLC28A1O00337 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SLC28A1O00337 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SLC28A1O00337 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.14■■□□□ 1.14
SLC28A1O00337 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
SLC28A1O00337 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.14■■□□□ 1.14
SLC28A1O00337 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
SLC28A1O00337 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SLC28A1O00337 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC22.14■■□□□ 1.13
SLC28A1O00337 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.14■■□□□ 1.13
SLC28A1O00337 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.14■■□□□ 1.13
SLC28A1O00337 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
SLC28A1O00337 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.13■■□□□ 1.13
SLC28A1O00337 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SLC28A1O00337 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.13■■□□□ 1.13
SLC28A1O00337 KRT18P60-201ENST00000312876 1297 ntBASIC22.13■■□□□ 1.13
SLC28A1O00337 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SLC28A1O00337 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.13■■□□□ 1.13
SLC28A1O00337 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SLC28A1O00337 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SLC28A1O00337 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.13■■□□□ 1.13
SLC28A1O00337 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SLC28A1O00337 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SLC28A1O00337 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
SLC28A1O00337 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.12■■□□□ 1.13
SLC28A1O00337 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SLC28A1O00337 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
SLC28A1O00337 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms