Protein–RNA interactions for Protein: A0A096LP49

CCDC187, Coiled-coil domain-containing protein 187, humanhuman

Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187A0A096LP49 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC22.06■■□□□ 1.12
CCDC187A0A096LP49 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.06■■□□□ 1.12
CCDC187A0A096LP49 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.06■■□□□ 1.12
CCDC187A0A096LP49 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
CCDC187A0A096LP49 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC187A0A096LP49 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC187A0A096LP49 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC187A0A096LP49 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 SYT6-210ENST00000641643 1587 ntBASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 MIR939-201ENST00000401314 82 ntBASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 AC104564.3-201ENST00000582367 638 ntBASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.05■■□□□ 1.12
CCDC187A0A096LP49 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC187A0A096LP49 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC187A0A096LP49 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC187A0A096LP49 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
CCDC187A0A096LP49 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC187A0A096LP49 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC187A0A096LP49 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC187A0A096LP49 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC187A0A096LP49 AP001330.3-201ENST00000520123 633 ntBASIC22.04■■□□□ 1.12
CCDC187A0A096LP49 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.04■■□□□ 1.12
CCDC187A0A096LP49 AC010501.1-201ENST00000606270 1962 ntBASIC22.04■■□□□ 1.12
CCDC187A0A096LP49 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC187A0A096LP49 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
CCDC187A0A096LP49 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.03■■□□□ 1.12
CCDC187A0A096LP49 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.03■■□□□ 1.12
CCDC187A0A096LP49 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC187A0A096LP49 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC187A0A096LP49 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
CCDC187A0A096LP49 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC187A0A096LP49 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC187A0A096LP49 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC187A0A096LP49 AC091305.1-201ENST00000479476 895 ntBASIC22.02■■□□□ 1.12
CCDC187A0A096LP49 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC187A0A096LP49 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC187A0A096LP49 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC187A0A096LP49 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.02■■□□□ 1.11
CCDC187A0A096LP49 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC187A0A096LP49 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
CCDC187A0A096LP49 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC187A0A096LP49 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC187A0A096LP49 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
CCDC187A0A096LP49 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC187A0A096LP49 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22■■□□□ 1.11
CCDC187A0A096LP49 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC187A0A096LP49 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC187A0A096LP49 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
CCDC187A0A096LP49 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC187A0A096LP49 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22■■□□□ 1.11
CCDC187A0A096LP49 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22■■□□□ 1.11
CCDC187A0A096LP49 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC187A0A096LP49 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC187A0A096LP49 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC22■■□□□ 1.11
CCDC187A0A096LP49 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC187A0A096LP49 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 MIR4767-201ENST00000582827 78 ntBASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC187A0A096LP49 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC187A0A096LP49 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC187A0A096LP49 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC187A0A096LP49 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC187A0A096LP49 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC187A0A096LP49 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.96■■□□□ 1.11
CCDC187A0A096LP49 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
CCDC187A0A096LP49 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC187A0A096LP49 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC187A0A096LP49 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC187A0A096LP49 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC187A0A096LP49 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
CCDC187A0A096LP49 SERBP1P1-201ENST00000396021 1160 ntBASIC21.95■■□□□ 1.1
CCDC187A0A096LP49 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC187A0A096LP49 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.95■■□□□ 1.1
CCDC187A0A096LP49 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
CCDC187A0A096LP49 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.95■■□□□ 1.1
CCDC187A0A096LP49 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.95■■□□□ 1.1
CCDC187A0A096LP49 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.95■■□□□ 1.1
CCDC187A0A096LP49 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.94■■□□□ 1.1
CCDC187A0A096LP49 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CCDC187A0A096LP49 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.94■■□□□ 1.1
CCDC187A0A096LP49 CA15P2-201ENST00000611168 834 ntBASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms