Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC12.45□□□□□ -0.42
FOXA2Q9Y261 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 AC022144.1-201ENST00000602255 1580 ntBASIC12.44□□□□□ -0.42
FOXA2Q9Y261 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 TSSK5P-201ENST00000423978 907 ntBASIC12.44□□□□□ -0.42
FOXA2Q9Y261 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 AC074044.1-201ENST00000609673 707 ntBASIC12.44□□□□□ -0.42
FOXA2Q9Y261 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 SERF2-217ENST00000630046 862 ntTSL 5 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 CICP14-201ENST00000629111 2732 ntBASIC12.44□□□□□ -0.42
FOXA2Q9Y261 Z97205.2-201ENST00000564697 1639 ntBASIC12.44□□□□□ -0.42
FOXA2Q9Y261 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
FOXA2Q9Y261 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 AP000845.1-201ENST00000581677 2131 ntBASIC12.43□□□□□ -0.42
FOXA2Q9Y261 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 BTBD7P1-201ENST00000447253 1453 ntBASIC12.43□□□□□ -0.42
FOXA2Q9Y261 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 AC012508.2-201ENST00000567613 1472 ntBASIC12.43□□□□□ -0.42
FOXA2Q9Y261 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 AC074338.1-201ENST00000416825 156 ntBASIC12.43□□□□□ -0.42
FOXA2Q9Y261 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC12.43□□□□□ -0.42
FOXA2Q9Y261 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms