Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ST20-AS1-201ENST00000560255 4223 ntBASIC17.83■□□□□ 0.44
CCDC39Q9UFE4 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC39Q9UFE4 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
CCDC39Q9UFE4 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC39Q9UFE4 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC39Q9UFE4 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC39Q9UFE4 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC39Q9UFE4 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
CCDC39Q9UFE4 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC39Q9UFE4 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC39Q9UFE4 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 HSPA7-201ENST00000445535 1927 ntBASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 AC109322.1-201ENST00000524499 1264 ntBASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 AC023024.2-201ENST00000623561 1993 ntBASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 AC127383.1-201ENST00000444697 1800 ntBASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CCDC39Q9UFE4 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 AC027601.5-201ENST00000624065 2482 ntBASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 AC025678.2-201ENST00000562061 970 ntBASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 AC004449.1-201ENST00000564240 433 ntBASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 AC067750.1-201ENST00000608826 6545 ntBASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC39Q9UFE4 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC39Q9UFE4 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms