Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28BQ9BUN5 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 AC007787.1-201ENST00000588095 1583 ntBASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CCDC28BQ9BUN5 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.02
CCDC28BQ9BUN5 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC28BQ9BUN5 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC28BQ9BUN5 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.96□□□□□ -0.02
CCDC28BQ9BUN5 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
CCDC28BQ9BUN5 AP001267.2-201ENST00000532619 2086 ntBASIC14.96□□□□□ -0.02
CCDC28BQ9BUN5 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC28BQ9BUN5 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
CCDC28BQ9BUN5 AC087386.2-201ENST00000623212 4637 ntBASIC14.96□□□□□ -0.02
CCDC28BQ9BUN5 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC28BQ9BUN5 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CCDC28BQ9BUN5 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 HLA-A-201ENST00000376802 1334 ntBASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 AL591122.2-201ENST00000624125 1853 ntBASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 CES1P1-201ENST00000421606 1704 ntBASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 LINC01230-201ENST00000625222 3017 ntBASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 KRT8P48-201ENST00000515599 1220 ntBASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 AC152010.1-201ENST00000415779 2006 ntBASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms