Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 AC069262.1-201ENST00000539058 672 ntBASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 Z92544.3-201ENST00000624747 417 ntBASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 CETN4P-206ENST00000642099 2168 ntBASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM56Q9BRZ2 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 ACE3P-201ENST00000423435 1973 ntBASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 AL512356.2-201ENST00000546955 174 ntBASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 AL138828.2-201ENST00000615812 383 ntBASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 AL033527.5-202ENST00000641632 1098 ntBASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 LINC01101-201ENST00000622953 1884 ntBASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.71■□□□□ 0.11
TRIM56Q9BRZ2 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
TRIM56Q9BRZ2 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
TRIM56Q9BRZ2 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM56Q9BRZ2 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM56Q9BRZ2 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM56Q9BRZ2 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.71■□□□□ 0.1
TRIM56Q9BRZ2 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM56Q9BRZ2 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
TRIM56Q9BRZ2 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 Z97205.2-201ENST00000564697 1639 ntBASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 SPDYE7P-202ENST00000420373 878 ntBASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 HLA-J-203ENST00000494367 1087 ntBASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
TRIM56Q9BRZ2 SLED1-202ENST00000512051 380 ntBASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms