Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
ECHDC3Q96DC8 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
ECHDC3Q96DC8 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ECHDC3Q96DC8 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
ECHDC3Q96DC8 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
ECHDC3Q96DC8 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 AC055811.4-201ENST00000624039 1754 ntBASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 KLF2P4-201ENST00000451959 1225 ntBASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 CTBP2P5-201ENST00000454986 1264 ntBASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 AP005482.1-201ENST00000563722 1273 ntBASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 AC023157.3-201ENST00000619086 2088 ntBASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ECHDC3Q96DC8 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 AC006001.1-201ENST00000325130 474 ntBASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 CD8B2-202ENST00000417670 633 ntBASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 FAM197Y7-201ENST00000432892 766 ntBASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 RNA5SP486-201ENST00000515961 83 ntBASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 MIR4259-201ENST00000584466 101 ntBASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 ENPP7P14-201ENST00000621765 1040 ntBASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 RHOXF1P1-202ENST00000635473 501 ntBASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 COX11-210ENST00000639671 696 ntBASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 ZBED1P1-201ENST00000502364 1930 ntBASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
ECHDC3Q96DC8 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ECHDC3Q96DC8 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
ECHDC3Q96DC8 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.24■□□□□ 0.03
ECHDC3Q96DC8 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms