Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
HMGCS2P54868 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HMGCS2P54868 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 SLC16A6P1-201ENST00000413214 1059 ntBASIC17.51■□□□□ 0.39
HMGCS2P54868 AC012618.1-201ENST00000461223 412 ntBASIC17.51■□□□□ 0.39
HMGCS2P54868 PARP8-206ENST00000503665 572 ntTSL 4 BASIC17.51■□□□□ 0.39
HMGCS2P54868 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS2P54868 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC17.51■□□□□ 0.39
HMGCS2P54868 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS2P54868 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS2P54868 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGCS2P54868 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS2P54868 AC100827.2-201ENST00000563214 1194 ntBASIC17.51■□□□□ 0.39
HMGCS2P54868 MIR3907-201ENST00000579424 151 ntBASIC17.51■□□□□ 0.39
HMGCS2P54868 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC17.51■□□□□ 0.39
HMGCS2P54868 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGCS2P54868 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.51■□□□□ 0.39
HMGCS2P54868 AC020910.5-201ENST00000623668 1865 ntBASIC17.51■□□□□ 0.39
HMGCS2P54868 PCBP2-OT1-201ENST00000634357 590 ntBASIC17.51■□□□□ 0.39
HMGCS2P54868 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 AL805961.1-203ENST00000641078 1258 ntBASIC17.51■□□□□ 0.39
HMGCS2P54868 AC068587.8-201ENST00000641239 219 ntBASIC17.51■□□□□ 0.39
HMGCS2P54868 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
HMGCS2P54868 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGCS2P54868 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGCS2P54868 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HMGCS2P54868 REXO1L4P-201ENST00000605109 1937 ntBASIC17.51■□□□□ 0.39
HMGCS2P54868 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
HMGCS2P54868 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS2P54868 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
HMGCS2P54868 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
HMGCS2P54868 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGCS2P54868 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HMGCS2P54868 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGCS2P54868 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HMGCS2P54868 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 E2F3P2-201ENST00000447755 1422 ntBASIC17.5■□□□□ 0.39
HMGCS2P54868 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGCS2P54868 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGCS2P54868 MPRIPP1-201ENST00000452433 1089 ntBASIC17.5■□□□□ 0.39
HMGCS2P54868 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC17.5■□□□□ 0.39
HMGCS2P54868 SUPT4H1P2-201ENST00000501248 353 ntBASIC17.5■□□□□ 0.39
HMGCS2P54868 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGCS2P54868 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 SYT17-208ENST00000568433 812 ntTSL 3 BASIC17.5■□□□□ 0.39
HMGCS2P54868 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 MIR4722-201ENST00000578292 60 ntBASIC17.5■□□□□ 0.39
HMGCS2P54868 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 AL133499.1-201ENST00000596207 608 ntBASIC17.5■□□□□ 0.39
HMGCS2P54868 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC17.5■□□□□ 0.39
HMGCS2P54868 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 AC011840.2-201ENST00000563063 1520 ntBASIC17.5■□□□□ 0.39
HMGCS2P54868 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGCS2P54868 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 AC092850.2-201ENST00000623821 2697 ntBASIC17.5■□□□□ 0.39
HMGCS2P54868 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HMGCS2P54868 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGCS2P54868 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS2P54868 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HMGCS2P54868 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HMGCS2P54868 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HMGCS2P54868 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
HMGCS2P54868 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGCS2P54868 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGCS2P54868 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC17.49■□□□□ 0.39
HMGCS2P54868 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms