Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.63■□□□□ 0.57
NUP98P52948 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC18.63■□□□□ 0.57
NUP98P52948 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
NUP98P52948 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
NUP98P52948 RNA5SP359-201ENST00000364838 113 ntBASIC18.63■□□□□ 0.57
NUP98P52948 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC18.63■□□□□ 0.57
NUP98P52948 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC18.63■□□□□ 0.57
NUP98P52948 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC18.63■□□□□ 0.57
NUP98P52948 AC090857.1-201ENST00000527400 390 ntBASIC18.63■□□□□ 0.57
NUP98P52948 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.63■□□□□ 0.57
NUP98P52948 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
NUP98P52948 AC138894.2-201ENST00000602838 371 ntBASIC18.63■□□□□ 0.57
NUP98P52948 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC18.63■□□□□ 0.57
NUP98P52948 AC133540.1-201ENST00000620845 1019 ntBASIC18.63■□□□□ 0.57
NUP98P52948 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP98P52948 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.63■□□□□ 0.57
NUP98P52948 AC092299.1-201ENST00000632679 757 ntBASIC18.63■□□□□ 0.57
NUP98P52948 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.63■□□□□ 0.57
NUP98P52948 AC007292.2-201ENST00000593524 1812 ntBASIC18.63■□□□□ 0.57
NUP98P52948 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NUP98P52948 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NUP98P52948 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
NUP98P52948 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP98P52948 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
NUP98P52948 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC18.62■□□□□ 0.57
NUP98P52948 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC18.62■□□□□ 0.57
NUP98P52948 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP98P52948 LINC01165-201ENST00000445190 1623 ntBASIC18.62■□□□□ 0.57
NUP98P52948 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP98P52948 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC18.62■□□□□ 0.57
NUP98P52948 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC18.62■□□□□ 0.57
NUP98P52948 AC012441.2-201ENST00000444843 739 ntBASIC18.62■□□□□ 0.57
NUP98P52948 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC18.62■□□□□ 0.57
NUP98P52948 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC18.62■□□□□ 0.57
NUP98P52948 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NUP98P52948 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC18.62■□□□□ 0.57
NUP98P52948 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC18.62■□□□□ 0.57
NUP98P52948 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP98P52948 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP98P52948 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.62■□□□□ 0.57
NUP98P52948 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
NUP98P52948 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NUP98P52948 AC007950.2-201ENST00000615045 2347 ntBASIC18.62■□□□□ 0.57
NUP98P52948 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP98P52948 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.62■□□□□ 0.57
NUP98P52948 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC18.62■□□□□ 0.57
NUP98P52948 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP98P52948 TBC1D3J-201ENST00000620719 1426 ntBASIC18.62■□□□□ 0.57
NUP98P52948 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP98P52948 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC18.61■□□□□ 0.57
NUP98P52948 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NUP98P52948 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP98P52948 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.61■□□□□ 0.57
NUP98P52948 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC18.61■□□□□ 0.57
NUP98P52948 FGFR3P1-201ENST00000449999 601 ntBASIC18.61■□□□□ 0.57
NUP98P52948 SCARNA21-201ENST00000517026 139 ntBASIC18.61■□□□□ 0.57
NUP98P52948 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC18.61■□□□□ 0.57
NUP98P52948 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC18.61■□□□□ 0.57
NUP98P52948 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC18.61■□□□□ 0.57
NUP98P52948 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
NUP98P52948 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC18.61■□□□□ 0.57
NUP98P52948 AL353770.1-201ENST00000614915 403 ntBASIC18.61■□□□□ 0.57
NUP98P52948 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
NUP98P52948 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.61■□□□□ 0.57
NUP98P52948 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
NUP98P52948 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
NUP98P52948 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP98P52948 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP98P52948 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NUP98P52948 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NUP98P52948 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NUP98P52948 PTPA-215ENST00000432124 567 ntTSL 4 BASIC18.6■□□□□ 0.57
NUP98P52948 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC18.6■□□□□ 0.57
NUP98P52948 AC253536.4-201ENST00000440539 267 ntBASIC18.6■□□□□ 0.57
NUP98P52948 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms