Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 AGAP7P-201ENST00000582299 2062 ntBASIC16.24■□□□□ 0.19
LIG3P49916 AGAP14-201ENST00000624701 2060 ntBASIC16.24■□□□□ 0.19
LIG3P49916 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.24■□□□□ 0.19
LIG3P49916 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.24■□□□□ 0.19
LIG3P49916 BASP1P1-201ENST00000430708 665 ntBASIC16.24■□□□□ 0.19
LIG3P49916 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.24■□□□□ 0.19
LIG3P49916 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.24■□□□□ 0.19
LIG3P49916 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 RNA5SP421-201ENST00000516864 134 ntBASIC16.24■□□□□ 0.19
LIG3P49916 AC027369.6-201ENST00000525520 931 ntBASIC16.24■□□□□ 0.19
LIG3P49916 SPCS2P1-201ENST00000561636 679 ntBASIC16.24■□□□□ 0.19
LIG3P49916 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LIG3P49916 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.24■□□□□ 0.19
LIG3P49916 AC073592.8-201ENST00000624126 511 ntBASIC16.24■□□□□ 0.19
LIG3P49916 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.24■□□□□ 0.19
LIG3P49916 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.24■□□□□ 0.19
LIG3P49916 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC16.24■□□□□ 0.19
LIG3P49916 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.24■□□□□ 0.19
LIG3P49916 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
LIG3P49916 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC16.24■□□□□ 0.19
LIG3P49916 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 APP-205ENST00000358918 2366 ntTSL 5 BASIC16.23■□□□□ 0.19
LIG3P49916 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
LIG3P49916 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC16.23■□□□□ 0.19
LIG3P49916 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.23■□□□□ 0.19
LIG3P49916 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
LIG3P49916 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
LIG3P49916 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.23■□□□□ 0.19
LIG3P49916 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.23■□□□□ 0.19
LIG3P49916 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.23■□□□□ 0.19
LIG3P49916 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.23■□□□□ 0.19
LIG3P49916 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.23■□□□□ 0.19
LIG3P49916 AL365330.1-201ENST00000607459 531 ntBASIC16.23■□□□□ 0.19
LIG3P49916 AL138828.2-201ENST00000615812 383 ntBASIC16.23■□□□□ 0.19
LIG3P49916 SPDYE12P-201ENST00000618416 771 ntBASIC16.23■□□□□ 0.19
LIG3P49916 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
LIG3P49916 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.23■□□□□ 0.19
LIG3P49916 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 AL592424.1-201ENST00000563624 1536 ntBASIC16.23■□□□□ 0.19
LIG3P49916 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LIG3P49916 FGD5P1-202ENST00000614866 2498 ntBASIC16.23■□□□□ 0.19
LIG3P49916 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LIG3P49916 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC16.23■□□□□ 0.19
LIG3P49916 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LIG3P49916 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIG3P49916 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LIG3P49916 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
LIG3P49916 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.22■□□□□ 0.19
LIG3P49916 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
LIG3P49916 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIG3P49916 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
LIG3P49916 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms