Protein–RNA interactions for Protein: P49458

SRP9, Signal recognition particle 9 kDa protein, humanhuman

Known RBP Predictions only

Length 86 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP9P49458 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SRP9P49458 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SRP9P49458 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SRP9P49458 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.71□□□□□ -0.22
SRP9P49458 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
SRP9P49458 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SRP9P49458 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.71□□□□□ -0.22
SRP9P49458 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.71□□□□□ -0.22
SRP9P49458 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
SRP9P49458 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
SRP9P49458 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.7□□□□□ -0.22
SRP9P49458 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
SRP9P49458 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.7□□□□□ -0.22
SRP9P49458 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SRP9P49458 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.7□□□□□ -0.22
SRP9P49458 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
SRP9P49458 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
SRP9P49458 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
SRP9P49458 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
SRP9P49458 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.7□□□□□ -0.22
SRP9P49458 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC13.7□□□□□ -0.22
SRP9P49458 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC13.7□□□□□ -0.22
SRP9P49458 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 KLF2P3-201ENST00000451977 1087 ntBASIC13.7□□□□□ -0.22
SRP9P49458 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC13.7□□□□□ -0.22
SRP9P49458 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC13.7□□□□□ -0.22
SRP9P49458 AC105021.1-202ENST00000570572 669 ntBASIC13.7□□□□□ -0.22
SRP9P49458 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.7□□□□□ -0.22
SRP9P49458 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.7□□□□□ -0.22
SRP9P49458 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC13.7□□□□□ -0.22
SRP9P49458 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.7□□□□□ -0.22
SRP9P49458 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.7□□□□□ -0.22
SRP9P49458 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC13.7□□□□□ -0.22
SRP9P49458 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
SRP9P49458 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
SRP9P49458 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 AL928921.2-201ENST00000641325 2442 ntBASIC13.7□□□□□ -0.22
SRP9P49458 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
SRP9P49458 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SRP9P49458 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
SRP9P49458 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.7□□□□□ -0.22
SRP9P49458 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.69□□□□□ -0.22
SRP9P49458 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC13.69□□□□□ -0.22
SRP9P49458 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.69□□□□□ -0.22
SRP9P49458 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SRP9P49458 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.69□□□□□ -0.22
SRP9P49458 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 AC005252.3-201ENST00000623855 2258 ntBASIC13.69□□□□□ -0.22
SRP9P49458 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC13.69□□□□□ -0.22
SRP9P49458 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SRP9P49458 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
SRP9P49458 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SRP9P49458 BAD-202ENST00000394531 631 ntTSL 3 BASIC13.69□□□□□ -0.22
SRP9P49458 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.69□□□□□ -0.22
SRP9P49458 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC13.69□□□□□ -0.22
SRP9P49458 PMS2P2-201ENST00000425039 1128 ntBASIC13.69□□□□□ -0.22
SRP9P49458 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC13.69□□□□□ -0.22
SRP9P49458 MTND6P24-201ENST00000440466 518 ntBASIC13.69□□□□□ -0.22
SRP9P49458 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC13.69□□□□□ -0.22
SRP9P49458 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.69□□□□□ -0.22
SRP9P49458 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC13.69□□□□□ -0.22
SRP9P49458 BAD-207ENST00000544785 525 ntTSL 3 BASIC13.69□□□□□ -0.22
SRP9P49458 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC13.69□□□□□ -0.22
SRP9P49458 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SRP9P49458 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC13.69□□□□□ -0.22
SRP9P49458 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.69□□□□□ -0.22
SRP9P49458 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms