Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 AC073439.1-201ENST00000624121 1774 ntBASIC15.49■□□□□ 0.07
PTPN4P29074 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
PTPN4P29074 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 AL035456.1-201ENST00000456064 1369 ntBASIC15.49■□□□□ 0.07
PTPN4P29074 AC027601.5-201ENST00000624065 2482 ntBASIC15.49■□□□□ 0.07
PTPN4P29074 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 AC063926.2-201ENST00000623766 1308 ntBASIC15.48■□□□□ 0.07
PTPN4P29074 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.48■□□□□ 0.07
PTPN4P29074 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.48■□□□□ 0.07
PTPN4P29074 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.48■□□□□ 0.07
PTPN4P29074 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 FAM220BP-201ENST00000377689 816 ntBASIC15.48■□□□□ 0.07
PTPN4P29074 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.48■□□□□ 0.07
PTPN4P29074 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.48■□□□□ 0.07
PTPN4P29074 AC005034.1-201ENST00000426657 489 ntBASIC15.48■□□□□ 0.07
PTPN4P29074 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 HLA-V-204ENST00000476601 1289 ntBASIC15.48■□□□□ 0.07
PTPN4P29074 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.48■□□□□ 0.07
PTPN4P29074 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.48■□□□□ 0.07
PTPN4P29074 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
PTPN4P29074 AL138828.2-201ENST00000615812 383 ntBASIC15.48■□□□□ 0.07
PTPN4P29074 SPDYE12P-201ENST00000618416 771 ntBASIC15.48■□□□□ 0.07
PTPN4P29074 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.48■□□□□ 0.07
PTPN4P29074 AL035252.4-201ENST00000624174 288 ntBASIC15.48■□□□□ 0.07
PTPN4P29074 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.48■□□□□ 0.07
PTPN4P29074 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.48■□□□□ 0.07
PTPN4P29074 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
PTPN4P29074 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.48■□□□□ 0.07
PTPN4P29074 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
PTPN4P29074 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
PTPN4P29074 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.48■□□□□ 0.07
PTPN4P29074 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PTPN4P29074 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
PTPN4P29074 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
PTPN4P29074 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
PTPN4P29074 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
PTPN4P29074 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.47■□□□□ 0.07
PTPN4P29074 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.47■□□□□ 0.07
PTPN4P29074 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 TSSK5P-201ENST00000423978 907 ntBASIC15.47■□□□□ 0.07
PTPN4P29074 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.47■□□□□ 0.07
PTPN4P29074 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.47■□□□□ 0.07
PTPN4P29074 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.47■□□□□ 0.07
PTPN4P29074 AC098859.1-201ENST00000502915 1238 ntBASIC15.47■□□□□ 0.07
PTPN4P29074 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.47■□□□□ 0.07
PTPN4P29074 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.47■□□□□ 0.07
PTPN4P29074 AC009118.2-201ENST00000613275 655 ntBASIC15.47■□□□□ 0.07
PTPN4P29074 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
PTPN4P29074 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC15.47■□□□□ 0.07
PTPN4P29074 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PTPN4P29074 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
PTPN4P29074 REXO1L1P-202ENST00000608646 1974 ntBASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms