Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL5A3P25940 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A3P25940 HIST2H2BA-201ENST00000412169 381 ntBASIC18.72■□□□□ 0.59
COL5A3P25940 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC18.72■□□□□ 0.59
COL5A3P25940 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC18.72■□□□□ 0.59
COL5A3P25940 AL139008.1-201ENST00000437894 228 ntBASIC18.72■□□□□ 0.59
COL5A3P25940 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
COL5A3P25940 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A3P25940 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC18.72■□□□□ 0.59
COL5A3P25940 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC18.72■□□□□ 0.59
COL5A3P25940 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC18.72■□□□□ 0.59
COL5A3P25940 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC18.72■□□□□ 0.59
COL5A3P25940 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL5A3P25940 MIR6769A-201ENST00000617340 73 ntBASIC18.72■□□□□ 0.59
COL5A3P25940 AL132780.4-201ENST00000624870 1135 ntBASIC18.72■□□□□ 0.59
COL5A3P25940 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.72■□□□□ 0.59
COL5A3P25940 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A3P25940 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A3P25940 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC18.72■□□□□ 0.59
COL5A3P25940 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC18.72■□□□□ 0.59
COL5A3P25940 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A3P25940 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL5A3P25940 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC18.72■□□□□ 0.59
COL5A3P25940 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL5A3P25940 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A3P25940 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A3P25940 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A3P25940 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A3P25940 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
COL5A3P25940 IGHVIII-5-2-201ENST00000522505 261 ntBASIC18.71■□□□□ 0.59
COL5A3P25940 NUDT4P2-201ENST00000578341 546 ntBASIC18.71■□□□□ 0.59
COL5A3P25940 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
COL5A3P25940 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC18.71■□□□□ 0.59
COL5A3P25940 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC18.71■□□□□ 0.59
COL5A3P25940 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC18.71■□□□□ 0.59
COL5A3P25940 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC18.71■□□□□ 0.59
COL5A3P25940 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A3P25940 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC18.71■□□□□ 0.59
COL5A3P25940 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A3P25940 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A3P25940 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A3P25940 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.71■□□□□ 0.59
COL5A3P25940 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL5A3P25940 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A3P25940 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A3P25940 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A3P25940 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC18.71■□□□□ 0.59
COL5A3P25940 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC18.71■□□□□ 0.59
COL5A3P25940 AL035414.1-201ENST00000451327 857 ntBASIC18.71■□□□□ 0.59
COL5A3P25940 RN7SL818P-201ENST00000485099 259 ntBASIC18.71■□□□□ 0.59
COL5A3P25940 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL5A3P25940 SIGLEC18P-201ENST00000602271 909 ntBASIC18.71■□□□□ 0.59
COL5A3P25940 RN7SL725P-201ENST00000606439 259 ntBASIC18.71■□□□□ 0.59
COL5A3P25940 AC009084.3-201ENST00000623356 437 ntBASIC18.71■□□□□ 0.59
COL5A3P25940 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC18.71■□□□□ 0.59
COL5A3P25940 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC18.71■□□□□ 0.59
COL5A3P25940 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A3P25940 LINC02199-201ENST00000506655 2702 ntBASIC18.71■□□□□ 0.59
COL5A3P25940 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.71■□□□□ 0.59
COL5A3P25940 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A3P25940 AC126365.1-201ENST00000578585 1514 ntBASIC18.71■□□□□ 0.59
COL5A3P25940 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A3P25940 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.71■□□□□ 0.58
COL5A3P25940 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
COL5A3P25940 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 KHSRPP1-201ENST00000427983 1768 ntBASIC18.7■□□□□ 0.58
COL5A3P25940 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.7■□□□□ 0.58
COL5A3P25940 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.7■□□□□ 0.58
COL5A3P25940 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC18.7■□□□□ 0.58
COL5A3P25940 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 MARK2P16-201ENST00000605714 1723 ntBASIC18.7■□□□□ 0.58
COL5A3P25940 HNRNPA1P27-201ENST00000412087 955 ntBASIC18.7■□□□□ 0.58
COL5A3P25940 LYPLA2P1-203ENST00000447689 696 ntBASIC18.7■□□□□ 0.58
COL5A3P25940 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
COL5A3P25940 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC18.7■□□□□ 0.58
COL5A3P25940 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC18.7■□□□□ 0.58
COL5A3P25940 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
COL5A3P25940 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC18.7■□□□□ 0.58
COL5A3P25940 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC18.7■□□□□ 0.58
COL5A3P25940 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL5A3P25940 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
COL5A3P25940 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 LINC01815-202ENST00000641468 1409 ntBASIC18.7■□□□□ 0.58
COL5A3P25940 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A3P25940 JTB-202ENST00000356648 1040 ntTSL 2 BASIC18.69■□□□□ 0.58
COL5A3P25940 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A3P25940 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms