Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 AC007292.2-201ENST00000593524 1812 ntBASIC18.91■□□□□ 0.62
CACNA1FO60840 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 POM121L10P-201ENST00000436994 1285 ntBASIC18.91■□□□□ 0.62
CACNA1FO60840 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
CACNA1FO60840 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CACNA1FO60840 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC18.91■□□□□ 0.62
CACNA1FO60840 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 AC092135.3-201ENST00000624151 1846 ntBASIC18.91■□□□□ 0.62
CACNA1FO60840 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC18.91■□□□□ 0.62
CACNA1FO60840 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC18.91■□□□□ 0.62
CACNA1FO60840 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CACNA1FO60840 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC18.91■□□□□ 0.62
CACNA1FO60840 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.9■□□□□ 0.62
CACNA1FO60840 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.9■□□□□ 0.62
CACNA1FO60840 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC18.9■□□□□ 0.62
CACNA1FO60840 MIR4741-201ENST00000579822 90 ntBASIC18.9■□□□□ 0.62
CACNA1FO60840 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC18.9■□□□□ 0.62
CACNA1FO60840 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.9■□□□□ 0.62
CACNA1FO60840 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC18.9■□□□□ 0.62
CACNA1FO60840 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC18.9■□□□□ 0.62
CACNA1FO60840 DIO1-215ENST00000610607 796 ntTSL 5 BASIC18.9■□□□□ 0.62
CACNA1FO60840 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC18.9■□□□□ 0.62
CACNA1FO60840 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CACNA1FO60840 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC18.9■□□□□ 0.62
CACNA1FO60840 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC18.9■□□□□ 0.62
CACNA1FO60840 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CACNA1FO60840 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC18.9■□□□□ 0.62
CACNA1FO60840 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.9■□□□□ 0.62
CACNA1FO60840 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CACNA1FO60840 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 AK6-201ENST00000380818 1183 ntTSL 2 BASIC18.9■□□□□ 0.62
CACNA1FO60840 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC18.9■□□□□ 0.62
CACNA1FO60840 AC099548.2-209ENST00000480264 625 ntBASIC18.9■□□□□ 0.62
CACNA1FO60840 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.9■□□□□ 0.62
CACNA1FO60840 PCBP2-OT1-201ENST00000634357 590 ntBASIC18.9■□□□□ 0.62
CACNA1FO60840 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CACNA1FO60840 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC18.89■□□□□ 0.62
CACNA1FO60840 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
CACNA1FO60840 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CACNA1FO60840 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CACNA1FO60840 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
CACNA1FO60840 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CACNA1FO60840 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CACNA1FO60840 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.89■□□□□ 0.61
CACNA1FO60840 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
CACNA1FO60840 ST13P19-201ENST00000442505 1124 ntBASIC18.89■□□□□ 0.61
CACNA1FO60840 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC18.89■□□□□ 0.61
CACNA1FO60840 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC18.89■□□□□ 0.61
CACNA1FO60840 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC18.89■□□□□ 0.61
CACNA1FO60840 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.89■□□□□ 0.61
CACNA1FO60840 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CACNA1FO60840 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CACNA1FO60840 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CACNA1FO60840 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CACNA1FO60840 AC144831.1-201ENST00000573312 2656 ntBASIC18.88■□□□□ 0.61
CACNA1FO60840 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms