Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 RN7SL48P-201ENST00000579283 293 ntBASIC17.14■□□□□ 0.33
MSH4O15457 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 COX11-210ENST00000639671 696 ntBASIC17.14■□□□□ 0.33
MSH4O15457 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH4O15457 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH4O15457 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.14■□□□□ 0.33
MSH4O15457 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.14■□□□□ 0.33
MSH4O15457 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
MSH4O15457 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.14■□□□□ 0.33
MSH4O15457 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.14■□□□□ 0.33
MSH4O15457 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.14■□□□□ 0.33
MSH4O15457 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MSH4O15457 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.13■□□□□ 0.33
MSH4O15457 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
MSH4O15457 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.13■□□□□ 0.33
MSH4O15457 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
MSH4O15457 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
MSH4O15457 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.13■□□□□ 0.33
MSH4O15457 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
MSH4O15457 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
MSH4O15457 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 AC144831.1-201ENST00000573312 2656 ntBASIC17.13■□□□□ 0.33
MSH4O15457 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
MSH4O15457 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
MSH4O15457 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
MSH4O15457 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.13■□□□□ 0.33
MSH4O15457 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.13■□□□□ 0.33
MSH4O15457 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.13■□□□□ 0.33
MSH4O15457 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.13■□□□□ 0.33
MSH4O15457 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
MSH4O15457 AL008721.1-201ENST00000609964 604 ntBASIC17.13■□□□□ 0.33
MSH4O15457 AL603764.1-201ENST00000636452 321 ntBASIC17.13■□□□□ 0.33
MSH4O15457 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
MSH4O15457 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
MSH4O15457 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.13■□□□□ 0.33
MSH4O15457 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH4O15457 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
MSH4O15457 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.12■□□□□ 0.33
MSH4O15457 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MSH4O15457 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.12■□□□□ 0.33
MSH4O15457 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17.12■□□□□ 0.33
MSH4O15457 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
MSH4O15457 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
MSH4O15457 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.12■□□□□ 0.33
MSH4O15457 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.12■□□□□ 0.33
MSH4O15457 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MSH4O15457 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
MSH4O15457 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MSH4O15457 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MSH4O15457 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.12■□□□□ 0.33
MSH4O15457 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.12■□□□□ 0.33
MSH4O15457 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.12■□□□□ 0.33
MSH4O15457 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MSH4O15457 RNA5SP486-201ENST00000515961 83 ntBASIC17.12■□□□□ 0.33
MSH4O15457 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.12■□□□□ 0.33
MSH4O15457 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.12■□□□□ 0.33
MSH4O15457 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MSH4O15457 AP005482.1-201ENST00000563722 1273 ntBASIC17.12■□□□□ 0.33
MSH4O15457 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.12■□□□□ 0.33
MSH4O15457 ECM1P1-201ENST00000604092 1279 ntBASIC17.12■□□□□ 0.33
MSH4O15457 ENPP7P14-201ENST00000621765 1040 ntBASIC17.12■□□□□ 0.33
MSH4O15457 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.12■□□□□ 0.33
MSH4O15457 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.12■□□□□ 0.33
MSH4O15457 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms