Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.13□□□□□ -0.31
SDCBPO00560 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 CD81-202ENST00000381036 880 ntTSL 3 BASIC13.13□□□□□ -0.31
SDCBPO00560 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.13□□□□□ -0.31
SDCBPO00560 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC13.13□□□□□ -0.31
SDCBPO00560 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC13.13□□□□□ -0.31
SDCBPO00560 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.13□□□□□ -0.31
SDCBPO00560 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
SDCBPO00560 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.13□□□□□ -0.31
SDCBPO00560 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.13□□□□□ -0.31
SDCBPO00560 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
SDCBPO00560 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
SDCBPO00560 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.13□□□□□ -0.31
SDCBPO00560 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 ACE3P-201ENST00000423435 1973 ntBASIC13.12□□□□□ -0.31
SDCBPO00560 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
SDCBPO00560 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
SDCBPO00560 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
SDCBPO00560 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
SDCBPO00560 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 WASH3P-207ENST00000560956 1394 ntBASIC13.12□□□□□ -0.31
SDCBPO00560 FO538757.1-201ENST00000623083 1397 ntBASIC13.12□□□□□ -0.31
SDCBPO00560 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
SDCBPO00560 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 AC023141.5-201ENST00000458585 616 ntBASIC13.12□□□□□ -0.31
SDCBPO00560 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 GATD1-206ENST00000526325 756 ntTSL 5 BASIC13.12□□□□□ -0.31
SDCBPO00560 HNRNPUP1-201ENST00000554987 333 ntBASIC13.12□□□□□ -0.31
SDCBPO00560 AC093520.2-201ENST00000561830 333 ntBASIC13.12□□□□□ -0.31
SDCBPO00560 AC105021.1-202ENST00000570572 669 ntBASIC13.12□□□□□ -0.31
SDCBPO00560 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC13.12□□□□□ -0.31
SDCBPO00560 AC097359.3-201ENST00000603982 1210 ntBASIC13.12□□□□□ -0.31
SDCBPO00560 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.12□□□□□ -0.31
SDCBPO00560 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.12□□□□□ -0.31
SDCBPO00560 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
SDCBPO00560 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SDCBPO00560 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms