Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 AL844908.2-201ENST00000609461 460 ntBASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 AC004461.2-201ENST00000629517 803 ntBASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
LIMA1Q9UHB6 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 AC136759.1-202ENST00000530858 2194 ntBASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 AL139400.1-201ENST00000366220 510 ntBASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 AC004066.1-201ENST00000502488 802 ntBASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 AC092337.1-201ENST00000568699 1129 ntBASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 Z92544.3-201ENST00000624747 417 ntBASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 AL157414.3-201ENST00000624276 1954 ntBASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 ABR-228ENST00000574437 3196 ntTSL 5 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIMA1Q9UHB6 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 TUBB3P1-201ENST00000405796 1332 ntBASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms