Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 AC004890.2-204ENST00000481968 304 ntBASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 SAMD11P1-201ENST00000571429 661 ntBASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 SRD5A3P1-201ENST00000603021 949 ntBASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 AL359258.3-201ENST00000622910 2331 ntBASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 AC007686.3-201ENST00000619017 3487 ntBASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 AL512638.1-201ENST00000457493 794 ntBASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 AC008738.7-201ENST00000609744 511 ntBASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 AC093512.1-201ENST00000617969 520 ntBASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS29Q9UBQ0 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 CLK3P2-201ENST00000427566 1453 ntBASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS29Q9UBQ0 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms