Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 DFFBP1-201ENST00000433250 979 ntBASIC15.27■□□□□ 0.04
TREX1Q9NSU2 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 AC120045.2-201ENST00000567334 178 ntBASIC15.27■□□□□ 0.04
TREX1Q9NSU2 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 MTHFR-210ENST00000641407 2387 ntBASIC15.27■□□□□ 0.03
TREX1Q9NSU2 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TREX1Q9NSU2 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 MIR661-201ENST00000384842 89 ntBASIC15.26■□□□□ 0.03
TREX1Q9NSU2 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 AL442647.2-201ENST00000429864 857 ntBASIC15.26■□□□□ 0.03
TREX1Q9NSU2 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 AC124283.3-201ENST00000570869 594 ntBASIC15.26■□□□□ 0.03
TREX1Q9NSU2 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 AC093726.1-201ENST00000608064 963 ntBASIC15.26■□□□□ 0.03
TREX1Q9NSU2 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 FER1L4-210ENST00000615531 5998 ntBASIC15.26■□□□□ 0.03
TREX1Q9NSU2 AL137783.1-201ENST00000623494 1896 ntBASIC15.26■□□□□ 0.03
TREX1Q9NSU2 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.26■□□□□ 0.03
TREX1Q9NSU2 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 AC007191.1-201ENST00000623179 2995 ntBASIC15.25■□□□□ 0.03
TREX1Q9NSU2 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 AC098850.1-201ENST00000419919 790 ntBASIC15.25■□□□□ 0.03
TREX1Q9NSU2 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 AC134915.1-201ENST00000426461 574 ntBASIC15.25■□□□□ 0.03
TREX1Q9NSU2 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.25■□□□□ 0.03
TREX1Q9NSU2 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms