Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC17.67■□□□□ 0.42
CTCFP49711 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CTCFP49711 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.67■□□□□ 0.42
CTCFP49711 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.67■□□□□ 0.42
CTCFP49711 AL391256.1-201ENST00000443260 1855 ntBASIC17.67■□□□□ 0.42
CTCFP49711 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 GGT4P-201ENST00000623672 1708 ntBASIC17.67■□□□□ 0.42
CTCFP49711 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CTCFP49711 AC092171.3-201ENST00000610122 2651 ntBASIC17.66■□□□□ 0.42
CTCFP49711 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CTCFP49711 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.66■□□□□ 0.42
CTCFP49711 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.66■□□□□ 0.42
CTCFP49711 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC17.66■□□□□ 0.42
CTCFP49711 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CTCFP49711 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 OR2K2-202ENST00000374428 1038 ntBASIC17.66■□□□□ 0.42
CTCFP49711 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 AL136309.1-201ENST00000403917 691 ntBASIC17.66■□□□□ 0.42
CTCFP49711 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC17.66■□□□□ 0.42
CTCFP49711 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC17.66■□□□□ 0.42
CTCFP49711 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC17.66■□□□□ 0.42
CTCFP49711 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC17.66■□□□□ 0.42
CTCFP49711 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC17.66■□□□□ 0.42
CTCFP49711 AC026410.1-201ENST00000507366 1101 ntBASIC17.66■□□□□ 0.42
CTCFP49711 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC17.66■□□□□ 0.42
CTCFP49711 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC17.66■□□□□ 0.42
CTCFP49711 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC17.66■□□□□ 0.42
CTCFP49711 DDX5-235ENST00000630471 473 ntTSL 4 BASIC17.66■□□□□ 0.42
CTCFP49711 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CTCFP49711 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.66■□□□□ 0.42
CTCFP49711 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.66■□□□□ 0.42
CTCFP49711 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CTCFP49711 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CTCFP49711 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CTCFP49711 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CTCFP49711 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
CTCFP49711 CAP2P1-201ENST00000557743 1390 ntBASIC17.66■□□□□ 0.42
CTCFP49711 CROCCP1-201ENST00000426910 5675 ntBASIC17.65■□□□□ 0.42
CTCFP49711 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC17.65■□□□□ 0.42
CTCFP49711 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.65■□□□□ 0.42
CTCFP49711 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 AC245100.5-201ENST00000452108 331 ntBASIC17.65■□□□□ 0.42
CTCFP49711 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC17.65■□□□□ 0.42
CTCFP49711 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 SNORD3B-2-202ENST00000571722 791 ntBASIC17.65■□□□□ 0.42
CTCFP49711 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC17.65■□□□□ 0.42
CTCFP49711 REXO1L1P-202ENST00000608646 1974 ntBASIC17.65■□□□□ 0.42
CTCFP49711 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 AC148477.4-201ENST00000613430 1793 ntBASIC17.65■□□□□ 0.42
CTCFP49711 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CTCFP49711 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.65■□□□□ 0.42
CTCFP49711 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CTCFP49711 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.65■□□□□ 0.42
CTCFP49711 AL603756.1-201ENST00000606511 2163 ntBASIC17.64■□□□□ 0.42
CTCFP49711 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CTCFP49711 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CTCFP49711 PCDHA1-201ENST00000378133 2726 ntBASIC17.64■□□□□ 0.42
CTCFP49711 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.64■□□□□ 0.42
CTCFP49711 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.64■□□□□ 0.42
CTCFP49711 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CTCFP49711 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CTCFP49711 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CTCFP49711 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.64■□□□□ 0.41
CTCFP49711 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
CTCFP49711 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CTCFP49711 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms