Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
BRCA1P38398 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC18.04■□□□□ 0.48
BRCA1P38398 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.04■□□□□ 0.48
BRCA1P38398 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.04■□□□□ 0.48
BRCA1P38398 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.04■□□□□ 0.48
BRCA1P38398 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
BRCA1P38398 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
BRCA1P38398 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
BRCA1P38398 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC18.03■□□□□ 0.48
BRCA1P38398 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC18.03■□□□□ 0.48
BRCA1P38398 BRI3P1-201ENST00000440440 378 ntBASIC18.03■□□□□ 0.48
BRCA1P38398 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC18.03■□□□□ 0.48
BRCA1P38398 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.03■□□□□ 0.48
BRCA1P38398 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC18.03■□□□□ 0.48
BRCA1P38398 ABHD17AP9-201ENST00000561925 548 ntBASIC18.03■□□□□ 0.48
BRCA1P38398 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC18.03■□□□□ 0.48
BRCA1P38398 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
BRCA1P38398 MIR6816-201ENST00000620368 66 ntBASIC18.03■□□□□ 0.48
BRCA1P38398 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.03■□□□□ 0.48
BRCA1P38398 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC18.03■□□□□ 0.48
BRCA1P38398 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BRCA1P38398 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC18.03■□□□□ 0.48
BRCA1P38398 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC18.03■□□□□ 0.48
BRCA1P38398 AC003686.1-201ENST00000550956 1034 ntBASIC18.03■□□□□ 0.48
BRCA1P38398 HERC2P11-201ENST00000562845 725 ntBASIC18.03■□□□□ 0.48
BRCA1P38398 AC100756.2-201ENST00000569537 736 ntBASIC18.03■□□□□ 0.48
BRCA1P38398 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC18.03■□□□□ 0.48
BRCA1P38398 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.03■□□□□ 0.48
BRCA1P38398 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
BRCA1P38398 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
BRCA1P38398 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
BRCA1P38398 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.02■□□□□ 0.48
BRCA1P38398 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
BRCA1P38398 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
BRCA1P38398 CTBP2P8-201ENST00000422584 1330 ntBASIC18.02■□□□□ 0.48
BRCA1P38398 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
BRCA1P38398 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
BRCA1P38398 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC18.02■□□□□ 0.48
BRCA1P38398 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC18.02■□□□□ 0.48
BRCA1P38398 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC18.02■□□□□ 0.48
BRCA1P38398 SCARNA12-201ENST00000459155 270 ntBASIC18.02■□□□□ 0.48
BRCA1P38398 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
BRCA1P38398 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC18.02■□□□□ 0.48
BRCA1P38398 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC18.02■□□□□ 0.48
BRCA1P38398 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC18.02■□□□□ 0.48
BRCA1P38398 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
BRCA1P38398 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
BRCA1P38398 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
BRCA1P38398 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.48
BRCA1P38398 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
BRCA1P38398 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
BRCA1P38398 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC18.02■□□□□ 0.47
BRCA1P38398 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.02■□□□□ 0.47
BRCA1P38398 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
BRCA1P38398 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
BRCA1P38398 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
BRCA1P38398 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.02■□□□□ 0.47
BRCA1P38398 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC18.02■□□□□ 0.47
BRCA1P38398 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
BRCA1P38398 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
BRCA1P38398 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
BRCA1P38398 API5-208ENST00000531273 1868 ntTSL 2 BASIC18.02■□□□□ 0.47
BRCA1P38398 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
BRCA1P38398 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 KRT8P28-201ENST00000433288 1390 ntBASIC18.01■□□□□ 0.47
BRCA1P38398 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
BRCA1P38398 AC092127.1-201ENST00000567093 3455 ntBASIC18.01■□□□□ 0.47
BRCA1P38398 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.01■□□□□ 0.47
BRCA1P38398 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC18.01■□□□□ 0.47
BRCA1P38398 HNRNPA1P58-201ENST00000403629 610 ntBASIC18.01■□□□□ 0.47
BRCA1P38398 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC18.01■□□□□ 0.47
BRCA1P38398 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC18.01■□□□□ 0.47
BRCA1P38398 OR2A1-AS1-210ENST00000496968 531 ntBASIC18.01■□□□□ 0.47
BRCA1P38398 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC18.01■□□□□ 0.47
BRCA1P38398 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
BRCA1P38398 FTLP5-201ENST00000586853 534 ntBASIC18.01■□□□□ 0.47
BRCA1P38398 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms