Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.22■□□□□ 0.19
RTN3O95197 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC16.22■□□□□ 0.19
RTN3O95197 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RTN3O95197 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.22■□□□□ 0.19
RTN3O95197 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
RTN3O95197 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.22■□□□□ 0.19
RTN3O95197 NUS1P3-201ENST00000423502 862 ntBASIC16.22■□□□□ 0.19
RTN3O95197 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.22■□□□□ 0.19
RTN3O95197 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.22■□□□□ 0.19
RTN3O95197 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
RTN3O95197 AC004066.1-201ENST00000502488 802 ntBASIC16.22■□□□□ 0.19
RTN3O95197 AP001889.1-201ENST00000525414 633 ntBASIC16.22■□□□□ 0.19
RTN3O95197 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.22■□□□□ 0.19
RTN3O95197 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.22■□□□□ 0.19
RTN3O95197 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.22■□□□□ 0.19
RTN3O95197 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.22■□□□□ 0.19
RTN3O95197 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.22■□□□□ 0.19
RTN3O95197 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.22■□□□□ 0.19
RTN3O95197 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
RTN3O95197 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RTN3O95197 AP005019.2-201ENST00000615104 511 ntBASIC16.22■□□□□ 0.19
RTN3O95197 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.22■□□□□ 0.19
RTN3O95197 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.22■□□□□ 0.19
RTN3O95197 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RTN3O95197 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.22■□□□□ 0.19
RTN3O95197 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RTN3O95197 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.21■□□□□ 0.19
RTN3O95197 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.21■□□□□ 0.19
RTN3O95197 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.21■□□□□ 0.19
RTN3O95197 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.21■□□□□ 0.19
RTN3O95197 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.21■□□□□ 0.19
RTN3O95197 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.21■□□□□ 0.19
RTN3O95197 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.21■□□□□ 0.19
RTN3O95197 KRT18P25-201ENST00000508931 1278 ntBASIC16.21■□□□□ 0.19
RTN3O95197 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.21■□□□□ 0.19
RTN3O95197 AL008721.1-201ENST00000609964 604 ntBASIC16.21■□□□□ 0.19
RTN3O95197 MIR6805-201ENST00000615055 62 ntBASIC16.21■□□□□ 0.19
RTN3O95197 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RTN3O95197 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.21■□□□□ 0.19
RTN3O95197 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTN3O95197 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RTN3O95197 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RTN3O95197 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
RTN3O95197 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RTN3O95197 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.2■□□□□ 0.18
RTN3O95197 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 AC105250.1-201ENST00000509378 2057 ntBASIC16.2■□□□□ 0.18
RTN3O95197 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.2■□□□□ 0.18
RTN3O95197 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.2■□□□□ 0.18
RTN3O95197 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.2■□□□□ 0.18
RTN3O95197 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
RTN3O95197 BCRP2-202ENST00000447763 634 ntBASIC16.2■□□□□ 0.18
RTN3O95197 BCRP6-201ENST00000510112 632 ntBASIC16.2■□□□□ 0.18
RTN3O95197 BCRP7-201ENST00000511549 544 ntBASIC16.2■□□□□ 0.18
RTN3O95197 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.2■□□□□ 0.18
RTN3O95197 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.2■□□□□ 0.18
RTN3O95197 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.2■□□□□ 0.18
RTN3O95197 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTN3O95197 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC16.2■□□□□ 0.18
RTN3O95197 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms