Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 TREML5P-201ENST00000421694 576 ntBASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 AC093028.1-201ENST00000622998 982 ntBASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 AC018442.1-201ENST00000421439 2061 ntBASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMCH1Q9UPQ0 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 LILRP1-201ENST00000444199 1370 ntBASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMCH1Q9UPQ0 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 USP28-214ENST00000545540 3431 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 TSSK5P-201ENST00000423978 907 ntBASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
LIMCH1Q9UPQ0 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.49
LIMCH1Q9UPQ0 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC18.08■□□□□ 0.49
LIMCH1Q9UPQ0 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMCH1Q9UPQ0 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMCH1Q9UPQ0 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC18.08■□□□□ 0.49
LIMCH1Q9UPQ0 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMCH1Q9UPQ0 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms