Protein–RNA interactions for Protein: Q9NT62

ATG3, Ubiquitin-like-conjugating enzyme ATG3, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3Q9NT62 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG3Q9NT62 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATG3Q9NT62 RN7SKP230-201ENST00000365642 335 ntBASIC19.42■□□□□ 0.7
ATG3Q9NT62 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ATG3Q9NT62 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 RPL17P11-201ENST00000417593 544 ntBASIC19.42■□□□□ 0.7
ATG3Q9NT62 ISCA2P1-201ENST00000425548 448 ntBASIC19.42■□□□□ 0.7
ATG3Q9NT62 MDH2-205ENST00000461263 648 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 HLA-J-204ENST00000495278 958 ntBASIC19.42■□□□□ 0.7
ATG3Q9NT62 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG3Q9NT62 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG3Q9NT62 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG3Q9NT62 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG3Q9NT62 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG3Q9NT62 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ATG3Q9NT62 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.42■□□□□ 0.7
ATG3Q9NT62 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 RN7SKP214-201ENST00000364208 315 ntBASIC19.41■□□□□ 0.7
ATG3Q9NT62 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 AC006335.1-201ENST00000445200 547 ntBASIC19.41■□□□□ 0.7
ATG3Q9NT62 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 CDC23-208ENST00000505120 455 ntTSL 3 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 AC116345.2-201ENST00000512837 523 ntBASIC19.41■□□□□ 0.7
ATG3Q9NT62 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 AL132994.2-201ENST00000603120 687 ntBASIC19.41■□□□□ 0.7
ATG3Q9NT62 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
ATG3Q9NT62 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ATG3Q9NT62 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 MVK-214ENST00000629016 1591 ntTSL 5 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 AL359258.3-201ENST00000622910 2331 ntBASIC19.4■□□□□ 0.7
ATG3Q9NT62 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 STK33-217ENST00000534493 1895 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 HNRNPA1P41-201ENST00000397777 928 ntBASIC19.4■□□□□ 0.7
ATG3Q9NT62 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 AC008267.1-201ENST00000474858 1069 ntBASIC19.4■□□□□ 0.7
ATG3Q9NT62 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 RN7SL555P-201ENST00000584742 339 ntBASIC19.4■□□□□ 0.7
ATG3Q9NT62 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 AL136295.7-201ENST00000619226 1200 ntBASIC19.4■□□□□ 0.7
ATG3Q9NT62 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ATG3Q9NT62 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
ATG3Q9NT62 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms