Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC13.68□□□□□ -0.22
MMP28Q9H239 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 IGLL3P-201ENST00000412472 434 ntBASIC13.68□□□□□ -0.22
MMP28Q9H239 CDK2AP2P3-201ENST00000422476 372 ntBASIC13.68□□□□□ -0.22
MMP28Q9H239 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC13.68□□□□□ -0.22
MMP28Q9H239 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.68□□□□□ -0.22
MMP28Q9H239 STARD13-205ENST00000439831 945 ntTSL 2 BASIC13.68□□□□□ -0.22
MMP28Q9H239 NMU-202ENST00000505262 693 ntTSL 3 BASIC13.68□□□□□ -0.22
MMP28Q9H239 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.68□□□□□ -0.22
MMP28Q9H239 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 AC096734.2-201ENST00000562054 433 ntBASIC13.68□□□□□ -0.22
MMP28Q9H239 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC13.68□□□□□ -0.22
MMP28Q9H239 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC13.68□□□□□ -0.22
MMP28Q9H239 AC010327.4-202ENST00000591484 748 ntBASIC13.68□□□□□ -0.22
MMP28Q9H239 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC13.68□□□□□ -0.22
MMP28Q9H239 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC13.68□□□□□ -0.22
MMP28Q9H239 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 AC105206.1-202ENST00000314927 2368 ntBASIC13.68□□□□□ -0.22
MMP28Q9H239 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 MTHFR-210ENST00000641407 2387 ntBASIC13.68□□□□□ -0.22
MMP28Q9H239 AC012569.1-201ENST00000591191 1524 ntBASIC13.68□□□□□ -0.22
MMP28Q9H239 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.68□□□□□ -0.22
MMP28Q9H239 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
MMP28Q9H239 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
MMP28Q9H239 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC13.68□□□□□ -0.22
MMP28Q9H239 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
MMP28Q9H239 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC13.68□□□□□ -0.22
MMP28Q9H239 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
MMP28Q9H239 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
MMP28Q9H239 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
MMP28Q9H239 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
MMP28Q9H239 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.67□□□□□ -0.22
MMP28Q9H239 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
MMP28Q9H239 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC13.67□□□□□ -0.22
MMP28Q9H239 BEX3-201ENST00000361298 921 ntTSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
MMP28Q9H239 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 AL513480.1-201ENST00000451731 511 ntBASIC13.67□□□□□ -0.22
MMP28Q9H239 HS6ST1P1-201ENST00000481504 1234 ntBASIC13.67□□□□□ -0.22
MMP28Q9H239 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC13.67□□□□□ -0.22
MMP28Q9H239 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.67□□□□□ -0.22
MMP28Q9H239 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 MIR4515-201ENST00000584082 81 ntBASIC13.67□□□□□ -0.22
MMP28Q9H239 AC064836.3-201ENST00000607928 673 ntBASIC13.67□□□□□ -0.22
MMP28Q9H239 WT1-AS_2.1-201ENST00000613208 137 ntBASIC13.67□□□□□ -0.22
MMP28Q9H239 AC055717.3-201ENST00000622967 595 ntBASIC13.67□□□□□ -0.22
MMP28Q9H239 AC010507.1-201ENST00000633895 436 ntBASIC13.67□□□□□ -0.22
MMP28Q9H239 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC13.67□□□□□ -0.22
MMP28Q9H239 AL645728.2-201ENST00000641974 660 ntBASIC13.67□□□□□ -0.22
MMP28Q9H239 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC13.67□□□□□ -0.22
MMP28Q9H239 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 AC118758.2-201ENST00000614242 2813 ntBASIC13.67□□□□□ -0.22
MMP28Q9H239 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC13.67□□□□□ -0.22
MMP28Q9H239 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 AC011474.4-201ENST00000623523 2076 ntBASIC13.67□□□□□ -0.22
MMP28Q9H239 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
MMP28Q9H239 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.67□□□□□ -0.22
MMP28Q9H239 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
MMP28Q9H239 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MMP28Q9H239 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
MMP28Q9H239 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
MMP28Q9H239 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.66□□□□□ -0.22
MMP28Q9H239 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
MMP28Q9H239 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms