Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 PFN2-206ENST00000461930 606 ntTSL 4 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 POU5F1P2-201ENST00000521750 823 ntBASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 AP003392.6-201ENST00000607709 325 ntBASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 AC023024.2-201ENST00000623561 1993 ntBASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 STK26-204ENST00000481105 1835 ntTSL 2 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHANK3Q9BYB0 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 MROH4P-201ENST00000431302 1578 ntBASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 AL627422.1-201ENST00000434104 580 ntBASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 PIN4P1-201ENST00000451079 396 ntBASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 AC008723.1-201ENST00000506922 207 ntBASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 CCNC-217ENST00000523985 958 ntTSL 2 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 POLD4-208ENST00000532830 904 ntTSL 3 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHANK3Q9BYB0 KRT18P9-201ENST00000604826 1300 ntBASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 AL031713.1-201ENST00000564813 661 ntBASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHANK3Q9BYB0 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SHANK3Q9BYB0 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SHANK3Q9BYB0 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SHANK3Q9BYB0 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SHANK3Q9BYB0 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC19.27■□□□□ 0.67
SHANK3Q9BYB0 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SHANK3Q9BYB0 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms