Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC17.57■□□□□ 0.4
USP28Q96RU2 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
USP28Q96RU2 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 AL157414.3-201ENST00000624276 1954 ntBASIC17.57■□□□□ 0.4
USP28Q96RU2 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.57■□□□□ 0.4
USP28Q96RU2 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 AC067863.1-201ENST00000494933 530 ntBASIC17.57■□□□□ 0.4
USP28Q96RU2 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.57■□□□□ 0.4
USP28Q96RU2 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 DUX4L27-201ENST00000554796 1261 ntBASIC17.57■□□□□ 0.4
USP28Q96RU2 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.57■□□□□ 0.4
USP28Q96RU2 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
USP28Q96RU2 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.57■□□□□ 0.4
USP28Q96RU2 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.57■□□□□ 0.4
USP28Q96RU2 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
USP28Q96RU2 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
USP28Q96RU2 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.57■□□□□ 0.4
USP28Q96RU2 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
USP28Q96RU2 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.57■□□□□ 0.4
USP28Q96RU2 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.57■□□□□ 0.4
USP28Q96RU2 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
USP28Q96RU2 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP28Q96RU2 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 CLK3P2-201ENST00000427566 1453 ntBASIC17.56■□□□□ 0.4
USP28Q96RU2 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
USP28Q96RU2 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 LILRP1-201ENST00000444199 1370 ntBASIC17.56■□□□□ 0.4
USP28Q96RU2 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.56■□□□□ 0.4
USP28Q96RU2 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.56■□□□□ 0.4
USP28Q96RU2 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.56■□□□□ 0.4
USP28Q96RU2 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.56■□□□□ 0.4
USP28Q96RU2 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.56■□□□□ 0.4
USP28Q96RU2 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 MIR943-201ENST00000401286 94 ntBASIC17.56■□□□□ 0.4
USP28Q96RU2 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.56■□□□□ 0.4
USP28Q96RU2 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.56■□□□□ 0.4
USP28Q96RU2 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
USP28Q96RU2 FAM86GP-201ENST00000448322 971 ntBASIC17.56■□□□□ 0.4
USP28Q96RU2 GAPDHP40-201ENST00000505218 1006 ntBASIC17.56■□□□□ 0.4
USP28Q96RU2 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.56■□□□□ 0.4
USP28Q96RU2 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.56■□□□□ 0.4
USP28Q96RU2 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.56■□□□□ 0.4
USP28Q96RU2 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.56■□□□□ 0.4
USP28Q96RU2 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
USP28Q96RU2 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
USP28Q96RU2 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.56■□□□□ 0.4
USP28Q96RU2 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.56■□□□□ 0.4
USP28Q96RU2 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
USP28Q96RU2 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.56■□□□□ 0.4
USP28Q96RU2 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.56■□□□□ 0.4
USP28Q96RU2 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
USP28Q96RU2 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.56■□□□□ 0.4
USP28Q96RU2 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
USP28Q96RU2 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
USP28Q96RU2 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
USP28Q96RU2 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC17.56■□□□□ 0.4
USP28Q96RU2 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 AC007787.1-201ENST00000588095 1583 ntBASIC17.56■□□□□ 0.4
USP28Q96RU2 UCKL1-AS1-201ENST00000623569 3602 ntBASIC17.56■□□□□ 0.4
USP28Q96RU2 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
USP28Q96RU2 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP28Q96RU2 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms