Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 EIF3FP3-201ENST00000434851 1086 ntBASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 GAPDHP40-201ENST00000505218 1006 ntBASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 AL359711.2-201ENST00000563105 872 ntBASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 MIR6787-201ENST00000616675 61 ntBASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SHROOM3Q8TF72 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 ACTBP8-201ENST00000403258 1108 ntBASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 MEP1AP4-201ENST00000423244 1087 ntBASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 ACE3P-201ENST00000423435 1973 ntBASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.61■□□□□ 0.09
SHROOM3Q8TF72 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 RPSAP52-203ENST00000622976 1023 ntBASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 AC012508.2-201ENST00000567613 1472 ntBASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 KRT8P14-201ENST00000414254 1442 ntBASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 C1QBPP1-201ENST00000400117 770 ntBASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.6■□□□□ 0.09
SHROOM3Q8TF72 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms