Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 AC009090.5-201ENST00000624886 2285 ntBASIC19■□□□□ 0.63
RC3H1Q5TC82 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
RC3H1Q5TC82 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
RC3H1Q5TC82 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC19■□□□□ 0.63
RC3H1Q5TC82 AC026320.2-201ENST00000434379 478 ntBASIC19■□□□□ 0.63
RC3H1Q5TC82 AL157407.1-201ENST00000435784 904 ntBASIC19■□□□□ 0.63
RC3H1Q5TC82 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC19■□□□□ 0.63
RC3H1Q5TC82 AL031713.1-201ENST00000564813 661 ntBASIC19■□□□□ 0.63
RC3H1Q5TC82 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC19■□□□□ 0.63
RC3H1Q5TC82 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC19■□□□□ 0.63
RC3H1Q5TC82 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC19■□□□□ 0.63
RC3H1Q5TC82 HPN-206ENST00000597419 1212 ntTSL 5 BASIC19■□□□□ 0.63
RC3H1Q5TC82 MEG3_2.1-201ENST00000611456 105 ntBASIC19■□□□□ 0.63
RC3H1Q5TC82 AL157813.1-201ENST00000612996 587 ntBASIC19■□□□□ 0.63
RC3H1Q5TC82 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
RC3H1Q5TC82 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC19■□□□□ 0.63
RC3H1Q5TC82 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 STK33-217ENST00000534493 1895 ntTSL 2 BASIC19■□□□□ 0.63
RC3H1Q5TC82 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC19■□□□□ 0.63
RC3H1Q5TC82 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 SUPT20HL2-201ENST00000486479 2409 ntBASIC19■□□□□ 0.63
RC3H1Q5TC82 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC19■□□□□ 0.63
RC3H1Q5TC82 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 NKILA-202ENST00000614771 2598 ntBASIC18.99■□□□□ 0.63
RC3H1Q5TC82 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.99■□□□□ 0.63
RC3H1Q5TC82 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 TLE1P1-201ENST00000422965 589 ntBASIC18.99■□□□□ 0.63
RC3H1Q5TC82 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 RPL7P35-201ENST00000446943 740 ntBASIC18.99■□□□□ 0.63
RC3H1Q5TC82 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 AC242376.2-201ENST00000619355 883 ntBASIC18.99■□□□□ 0.63
RC3H1Q5TC82 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RC3H1Q5TC82 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 AL627389.1-201ENST00000413508 1182 ntBASIC18.98■□□□□ 0.63
RC3H1Q5TC82 HPGD-203ENST00000422112 805 ntTSL 2 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 AC008723.1-201ENST00000506922 207 ntBASIC18.98■□□□□ 0.63
RC3H1Q5TC82 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 FOS-204ENST00000554617 796 ntTSL 2 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 MIR3677-201ENST00000578964 60 ntBASIC18.98■□□□□ 0.63
RC3H1Q5TC82 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 AC007718.1-201ENST00000621078 280 ntBASIC18.98■□□□□ 0.63
RC3H1Q5TC82 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RC3H1Q5TC82 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms