Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 AC112693.3-201ENST00000624819 1983 ntBASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 AC079776.1-201ENST00000401540 1152 ntBASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 MRPS18AP1-201ENST00000414458 589 ntBASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 RAB43P1-201ENST00000561790 589 ntBASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 AL033527.4-201ENST00000641026 673 ntBASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PDLIM3Q53GG5 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 FAM86MP-201ENST00000340703 885 ntBASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 RPF1-202ENST00000370656 724 ntTSL 2 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 CDK4-206ENST00000549606 558 ntTSL 2 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
PDLIM3Q53GG5 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms