Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.28■□□□□ 0.2
LIG3P49916 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
LIG3P49916 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
LIG3P49916 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.28■□□□□ 0.2
LIG3P49916 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.28■□□□□ 0.2
LIG3P49916 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
LIG3P49916 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.28■□□□□ 0.2
LIG3P49916 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.28■□□□□ 0.2
LIG3P49916 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.28■□□□□ 0.2
LIG3P49916 AC093214.1-201ENST00000511688 1107 ntBASIC16.28■□□□□ 0.2
LIG3P49916 IGHV3-42-201ENST00000520410 361 ntBASIC16.28■□□□□ 0.2
LIG3P49916 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.28■□□□□ 0.2
LIG3P49916 AC061975.2-201ENST00000581722 295 ntBASIC16.28■□□□□ 0.2
LIG3P49916 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.28■□□□□ 0.2
LIG3P49916 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.28■□□□□ 0.2
LIG3P49916 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.28■□□□□ 0.2
LIG3P49916 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.28■□□□□ 0.2
LIG3P49916 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 TNN-203ENST00000622870 3719 ntTSL 5 BASIC16.28■□□□□ 0.2
LIG3P49916 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LIG3P49916 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LIG3P49916 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LIG3P49916 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
LIG3P49916 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
LIG3P49916 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.27■□□□□ 0.2
LIG3P49916 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
LIG3P49916 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.27■□□□□ 0.2
LIG3P49916 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.27■□□□□ 0.2
LIG3P49916 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.27■□□□□ 0.2
LIG3P49916 AC097493.3-201ENST00000509725 367 ntBASIC16.27■□□□□ 0.2
LIG3P49916 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.27■□□□□ 0.2
LIG3P49916 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.27■□□□□ 0.2
LIG3P49916 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.27■□□□□ 0.2
LIG3P49916 AC105021.1-202ENST00000570572 669 ntBASIC16.27■□□□□ 0.2
LIG3P49916 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.27■□□□□ 0.2
LIG3P49916 AC011467.4-201ENST00000594891 528 ntBASIC16.27■□□□□ 0.2
LIG3P49916 AL158211.3-201ENST00000607385 239 ntBASIC16.27■□□□□ 0.2
LIG3P49916 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.27■□□□□ 0.2
LIG3P49916 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
LIG3P49916 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG3P49916 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.27■□□□□ 0.19
LIG3P49916 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
LIG3P49916 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
LIG3P49916 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
LIG3P49916 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.27■□□□□ 0.19
LIG3P49916 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.27■□□□□ 0.19
LIG3P49916 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
LIG3P49916 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC16.27■□□□□ 0.19
LIG3P49916 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
LIG3P49916 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.27■□□□□ 0.19
LIG3P49916 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIG3P49916 AC126335.2-201ENST00000623362 4637 ntBASIC16.26■□□□□ 0.19
LIG3P49916 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 AL035456.1-201ENST00000456064 1369 ntBASIC16.26■□□□□ 0.19
LIG3P49916 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms